Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G089100.1 |
Family | PL4 |
Protein Properties | Length: 480 Molecular Weight: 55087.4 Isoelectric Point: 10.0441 |
Chromosome | Chromosome/Scaffold: 08 Start: 20474090 End: 20476311 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 14 | 460 | 0 |
REDREHSHCQVLAYPEAVLLTNPINPKLKGEVDDKYQYSIESKDNKLHGWIADHDAVGFWIITPSDEFRTGGPHKQDLTSHVGPTALSMFVSNHYTGKDI AEFYKERVAWKKAFGPVLIYLNSATFDHAHRYRKSLWKDAKKRLSKEIKSWPYSFAASKDYPHADHRGEVSGQLLVRDKYLHKQLMKAKSAFVGLAAPGR AGSWQTEGKGYQFWTQTDKAGRFSIKNVRRGKYNLYAWVHGFIGNYKLDRNVSVHTGYKKNLGTLIYDPPRSGPTLWEIGIPDRTAAEFFIPDPNPTFVN SILNHDDEKFRQYGLWDRYSDTYPHHDLVFKVGASNYSRDWFFAHVPRRTGNDTKATTWKIKFKLQEVNKSGKYTLQMALAAANFAEVQVRINKPDGSPH FTTNRIGYDNAVARHGIHGLYRLYSINVPGKRLRVGNNTIFLTQTRC |
Full Sequence |
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Protein Sequence Length: 480 Download |
MALSDTQQRI MPRREDREHS HCQVLAYPEA VLLTNPINPK LKGEVDDKYQ YSIESKDNKL 60 HGWIADHDAV GFWIITPSDE FRTGGPHKQD LTSHVGPTAL SMFVSNHYTG KDIAEFYKER 120 VAWKKAFGPV LIYLNSATFD HAHRYRKSLW KDAKKRLSKE IKSWPYSFAA SKDYPHADHR 180 GEVSGQLLVR DKYLHKQLMK AKSAFVGLAA PGRAGSWQTE GKGYQFWTQT DKAGRFSIKN 240 VRRGKYNLYA WVHGFIGNYK LDRNVSVHTG YKKNLGTLIY DPPRSGPTLW EIGIPDRTAA 300 EFFIPDPNPT FVNSILNHDD EKFRQYGLWD RYSDTYPHHD LVFKVGASNY SRDWFFAHVP 360 RRTGNDTKAT TWKIKFKLQE VNKSGKYTLQ MALAAANFAE VQVRINKPDG SPHFTTNRIG 420 YDNAVARHGI HGLYRLYSIN VPGKRLRVGN NTIFLTQTRC KDEFMAVMYD YIRLEGPAV* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 1.0e-12 | 1 | 45 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 9.0e-29 | 180 | 278 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 5.0e-34 | 25 | 137 | 113 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-48 | 290 | 475 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 1 | 477 | 201 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 1 | 477 | 201 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002306520.1 | 0 | 1 | 477 | 140 | 615 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 478 | 195 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 1 | 478 | 143 | 619 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT571707 | 210 | 1 | 210 | 0 |
ES839415 | 269 | 215 | 480 | 0 |
ES815855 | 339 | 102 | 436 | 0 |
DW508463 | 266 | 102 | 367 | 0 |
DT571707 | 30 | 207 | 236 | 0.000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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