Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G089300.1 |
Family | PL4 |
Protein Properties | Length: 681 Molecular Weight: 78439.4 Isoelectric Point: 6.9234 |
Chromosome | Chromosome/Scaffold: 08 Start: 20565154 End: 20570334 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 52 | 664 | 0 |
RKVELHREDNRVFIDNGLVEVTIENPSGHLSGIKYKGMLNVLETRNNNNNKGYWDIVWDNEAYDKLATQHVKIITETDELVELSFTKMWDITKDHGSSVP LNVDKRYIVRRGVPGLYMYGILERQEDFPDAHMYQIRIAFKLNEDKFHFMAVSDTKQRIMPSQEDRDESRCQVLAFKEAVLLTNPTNPQLKGEVDDKYQY STENKDNKVHGWISDDDAVGFWVITPSNEFRTGGPHKQDLTSHVGPTALSMFVSTHYTGTEMDVLYKKGETWKKVLGPVCMYLNSASWDEARHYRKALWN DANRQLREEIQSWPYNFTASEDFPHAQQRGEVNGQLLVRDQSLDKQLMQAKSAFVGLAAPAYAGSWQTEGKGYQFWTQTDNTGRFTIKNVRPGEYNFYAW VYGFIGNYKLNLKITIQPGNKINLGTLIYDPPRNGPTLWEIGIPDRTAAEFFIPEPNPTFVNSILNHDADKFRQYGLWDRYSDIYRDGDLVFTVGVSNYS KDWFFAHVPRLIGNETRATTWQIKYELQEVNKAGNYTLQLALAAASYAEVQVRINNPDANLPHFTTERIGYDNAVPRHGIHGLYRLYSINVPGNGFQRGN NTIFLTQTRCHDS |
Full Sequence |
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Protein Sequence Length: 681 Download |
MMEKVMQLNP IHSRHHVLWV FIIVHFSLLL FSAFSADIPP RKILNGEKKK SRKVELHRED 60 NRVFIDNGLV EVTIENPSGH LSGIKYKGML NVLETRNNNN NKGYWDIVWD NEAYDKLATQ 120 HVKIITETDE LVELSFTKMW DITKDHGSSV PLNVDKRYIV RRGVPGLYMY GILERQEDFP 180 DAHMYQIRIA FKLNEDKFHF MAVSDTKQRI MPSQEDRDES RCQVLAFKEA VLLTNPTNPQ 240 LKGEVDDKYQ YSTENKDNKV HGWISDDDAV GFWVITPSNE FRTGGPHKQD LTSHVGPTAL 300 SMFVSTHYTG TEMDVLYKKG ETWKKVLGPV CMYLNSASWD EARHYRKALW NDANRQLREE 360 IQSWPYNFTA SEDFPHAQQR GEVNGQLLVR DQSLDKQLMQ AKSAFVGLAA PAYAGSWQTE 420 GKGYQFWTQT DNTGRFTIKN VRPGEYNFYA WVYGFIGNYK LNLKITIQPG NKINLGTLIY 480 DPPRNGPTLW EIGIPDRTAA EFFIPEPNPT FVNSILNHDA DKFRQYGLWD RYSDIYRDGD 540 LVFTVGVSNY SKDWFFAHVP RLIGNETRAT TWQIKYELQE VNKAGNYTLQ LALAAASYAE 600 VQVRINNPDA NLPHFTTERI GYDNAVPRHG IHGLYRLYSI NVPGNGFQRG NNTIFLTQTR 660 CHDSFEAVMY DYIRFEGPAV * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 1.0e-29 | 379 | 478 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-48 | 490 | 676 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-64 | 56 | 338 | 295 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-70 | 49 | 245 | 201 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 46 | 678 | 44 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 17 | 678 | 15 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 63 | 678 | 1 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 22 | 679 | 14 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 63 | 679 | 2 | 619 | lyase, putative [Ricinus communis] |