y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G089300.2 |
Family | PL4 |
Protein Properties | Length: 593 Molecular Weight: 68269.5 Isoelectric Point: 6.3153 |
Chromosome | Chromosome/Scaffold: 08 Start: 20565115 End: 20570334 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 3 | 576 | 0 |
NVLETRNNNNNKGYWDIVWDNEAYDKLATQHVKIITETDELVELSFTKMWDITKDHGSSVPLNVDKRYIVRRGVPGLYMYGILERQEDFPDAHMYQIRIA FKLNEDKFHFMAVSDTKQRIMPSQEDRDESRCQVLAFKEAVLLTNPTNPQLKGEVDDKYQYSTENKDNKVHGWISDDDAVGFWVITPSNEFRTGGPHKQD LTSHVGPTALSMFVSTHYTGTEMDVLYKKGETWKKVLGPVCMYLNSASWDEARHYRKALWNDANRQLREEIQSWPYNFTASEDFPHAQQRGEVNGQLLVR DQSLDKQLMQAKSAFVGLAAPAYAGSWQTEGKGYQFWTQTDNTGRFTIKNVRPGEYNFYAWVYGFIGNYKLNLKITIQPGNKINLGTLIYDPPRNGPTLW EIGIPDRTAAEFFIPEPNPTFVNSILNHDADKFRQYGLWDRYSDIYRDGDLVFTVGVSNYSKDWFFAHVPRLIGNETRATTWQIKYELQEVNKAGNYTLQ LALAAASYAEVQVRINNPDANLPHFTTERIGYDNAVPRHGIHGLYRLYSINVPGNGFQRGNNTIFLTQTRCHDS |
Full Sequence |
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Protein Sequence Length: 593 Download |
MLNVLETRNN NNNKGYWDIV WDNEAYDKLA TQHVKIITET DELVELSFTK MWDITKDHGS 60 SVPLNVDKRY IVRRGVPGLY MYGILERQED FPDAHMYQIR IAFKLNEDKF HFMAVSDTKQ 120 RIMPSQEDRD ESRCQVLAFK EAVLLTNPTN PQLKGEVDDK YQYSTENKDN KVHGWISDDD 180 AVGFWVITPS NEFRTGGPHK QDLTSHVGPT ALSMFVSTHY TGTEMDVLYK KGETWKKVLG 240 PVCMYLNSAS WDEARHYRKA LWNDANRQLR EEIQSWPYNF TASEDFPHAQ QRGEVNGQLL 300 VRDQSLDKQL MQAKSAFVGL AAPAYAGSWQ TEGKGYQFWT QTDNTGRFTI KNVRPGEYNF 360 YAWVYGFIGN YKLNLKITIQ PGNKINLGTL IYDPPRNGPT LWEIGIPDRT AAEFFIPEPN 420 PTFVNSILNH DADKFRQYGL WDRYSDIYRD GDLVFTVGVS NYSKDWFFAH VPRLIGNETR 480 ATTWQIKYEL QEVNKAGNYT LQLALAAASY AEVQVRINNP DANLPHFTTE RIGYDNAVPR 540 HGIHGLYRLY SINVPGNGFQ RGNNTIFLTQ TRCHDSFEAV MYDYIRFEGP AV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-29 | 291 | 390 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-48 | 402 | 588 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-56 | 3 | 250 | 260 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-56 | 3 | 157 | 159 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 3 | 590 | 90 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 3 | 590 | 85 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 3 | 590 | 29 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 3 | 591 | 82 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 3 | 591 | 30 | 619 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES815855 | 364 | 214 | 572 | 0 |
ES839415 | 269 | 327 | 593 | 0 |
DW508463 | 266 | 214 | 479 | 0 |
DT571707 | 271 | 52 | 322 | 0 |
DT571707 | 30 | 319 | 348 | 0.002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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