| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G134500.1 |
| Family | GH28 |
| Protein Properties | Length: 473 Molecular Weight: 52280.4 Isoelectric Point: 6.0427 |
| Chromosome | Chromosome/Scaffold: 08 Start: 38232683 End: 38235034 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 423 | 0 |
| ADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSMNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGDNGTIDGQGSVWWNWFRSK TLNYTRPHLVELMNSTGVVISNLTFLNSPFWTIHPVYCSHVIVQDVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLISIKSGWDEYGISFARPSR NIIIRRLTGHNRNGSGIAIGSEMSGGVSEVYAENIYFFNSSTGIILKTARGRGGYVRNIYISNVTLVGVDTAIFFNSNFSQHPDEFYDPNSLPVIERITF KDVIGDNIKVAGLLKGIEGDSFRHICLLNITLDVTTKSPWNCSNIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 473 Download |
| MVNFVCICFQ LVYLLLVLAF FSHITWAVKG NSLCKQTGMG EIRPHSVTIT EFGAVGDGVT 60 LNTKAFQNAI FYLNSFADKG GAKLFVPAGR WLTGSFDLIS HLTLWLDKDA IILGSMNSDD 120 WPVVDPLPSY GRGRELPGGR HRSLIYGRNL TDVIITGDNG TIDGQGSVWW NWFRSKTLNY 180 TRPHLVELMN STGVVISNLT FLNSPFWTIH PVYCSHVIVQ DVTILAPLDS PNTDGIDPDS 240 SDDVCIEDCY ISTGDDLISI KSGWDEYGIS FARPSRNIII RRLTGHNRNG SGIAIGSEMS 300 GGVSEVYAEN IYFFNSSTGI ILKTARGRGG YVRNIYISNV TLVGVDTAIF FNSNFSQHPD 360 EFYDPNSLPV IERITFKDVI GDNIKVAGLL KGIEGDSFRH ICLLNITLDV TTKSPWNCSN 420 IQGYSSLVSP ETCEPLKESI YPKHYSDCYL LPNHLRSSAC HLAKETFPDI RS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-25 | 44 | 381 | 349 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-30 | 151 | 381 | 239 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 7.0e-31 | 45 | 430 | 405 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-65 | 47 | 362 | 349 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37055.1 | 0 | 21 | 457 | 17 | 453 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 21 | 457 | 68 | 504 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 21 | 449 | 17 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320934.1 | 0 | 12 | 439 | 1 | 427 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 3 | 458 | 9 | 464 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.00386e-43 | 41 | 409 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.00386e-43 | 41 | 409 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.00386e-43 | 41 | 409 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.00386e-43 | 41 | 409 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 9e-21 | 1 | 412 | 112 | 565 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
