| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G134500.2 |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 51822.7 Isoelectric Point: 6.1852 |
| Chromosome | Chromosome/Scaffold: 08 Start: 38232683 End: 38236191 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 419 | 0 |
| ADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSMNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGDNGTIDGQGSVWWNWFRSK TLNYTRPHLVELMNSTGVVISNLTFLNSPFWTIHPVYCSHVIVQDVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLISIKSGWDEYGISFARPSR NIIIRRLTGHNRNGSGIAIGSEMSGGVSEVYAENIYFFNSSTGIILKTARGRGGYVRNIYISNVTLVGVDTAIFFNSNFSQHPDEFYDPNSLPVIERITF KDVIGDNIKVAGLLKGIEGDSFRHICLLNITLDVTTKSPWNCSNIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 469 Download |
| MKSFFSLVYL LLVLAFFSHI TWAVKGNSLC KQTGMGEIRP HSVTITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAKL FVPAGRWLTG SFDLISHLTL WLDKDAIILG SMNSDDWPVV 120 DPLPSYGRGR ELPGGRHRSL IYGRNLTDVI ITGDNGTIDG QGSVWWNWFR SKTLNYTRPH 180 LVELMNSTGV VISNLTFLNS PFWTIHPVYC SHVIVQDVTI LAPLDSPNTD GIDPDSSDDV 240 CIEDCYISTG DDLISIKSGW DEYGISFARP SRNIIIRRLT GHNRNGSGIA IGSEMSGGVS 300 EVYAENIYFF NSSTGIILKT ARGRGGYVRN IYISNVTLVG VDTAIFFNSN FSQHPDEFYD 360 PNSLPVIERI TFKDVIGDNI KVAGLLKGIE GDSFRHICLL NITLDVTTKS PWNCSNIQGY 420 SSLVSPETCE PLKESIYPKH YSDCYLLPNH LRSSACHLAK ETFPDIRS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-25 | 40 | 377 | 346 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-30 | 147 | 377 | 239 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 1.0e-30 | 41 | 426 | 405 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 7.0e-65 | 43 | 358 | 349 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37055.1 | 0 | 1 | 453 | 1 | 453 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 17 | 453 | 68 | 504 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 1 | 445 | 1 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320934.1 | 0 | 8 | 435 | 1 | 427 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 17 | 454 | 27 | 464 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.94922e-44 | 37 | 405 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.94922e-44 | 37 | 405 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.94922e-44 | 37 | 405 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.94922e-44 | 37 | 405 | 22 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-20 | 87 | 418 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
