| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G136700.1 |
| Family | GH28 |
| Protein Properties | Length: 474 Molecular Weight: 51667.3 Isoelectric Point: 6.1003 |
| Chromosome | Chromosome/Scaffold: 08 Start: 38591824 End: 38594143 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 101 | 428 | 0 |
| DTACQVNSSSTIYVPNGFSFMIQSTIFTGPCQGGLVFQIDGTLMPPDGPEEWPKNNSKRQWLVFYRVNQMSLQGGGAIDGRGQKWWDLPCKPHKGINATT LPGPCDSPVAIRFFMSSNLTVQGLKVKDSPQFHFRFDGCQNVHVESLHITAPALSPNTDGIHIANTNGVQIYNSVISNGDDCVSIGSGCYDVDIRNLTCG PGHGISIGSLGNHNSKACVHNVTVRDSVIKVSDNGVRIKTWQGGSGAVSGIMFGNIHMISVRNPIIIDQFYCLTKDCLNQTSAVYVSDILYEGIKGTYDT RSPPMHFGCSDSVPCTNITLSDIELLPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 474 Download |
| MEYSCVSLLT FCMSLLCFLI STQGRWHHHH HHTKHKHHSH HDTMPEISAP PEPSIALAPE 60 PSGPPDDENS GGSTEVFDVR KFGAIGDGVT DDTNAFKMAW DTACQVNSSS TIYVPNGFSF 120 MIQSTIFTGP CQGGLVFQID GTLMPPDGPE EWPKNNSKRQ WLVFYRVNQM SLQGGGAIDG 180 RGQKWWDLPC KPHKGINATT LPGPCDSPVA IRFFMSSNLT VQGLKVKDSP QFHFRFDGCQ 240 NVHVESLHIT APALSPNTDG IHIANTNGVQ IYNSVISNGD DCVSIGSGCY DVDIRNLTCG 300 PGHGISIGSL GNHNSKACVH NVTVRDSVIK VSDNGVRIKT WQGGSGAVSG IMFGNIHMIS 360 VRNPIIIDQF YCLTKDCLNQ TSAVYVSDIL YEGIKGTYDT RSPPMHFGCS DSVPCTNITL 420 SDIELLPAQG DIVLDPFCWN AYGELETLTI PPVYCLREGV PRSILDNKDM DHC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-82 | 73 | 456 | 392 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 3.0e-83 | 71 | 452 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-92 | 104 | 425 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-103 | 67 | 425 | 362 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-127 | 73 | 452 | 382 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37004.1 | 0 | 51 | 473 | 59 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002272733.1 | 0 | 51 | 473 | 40 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302793.1 | 0 | 1 | 473 | 1 | 457 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320271.1 | 0 | 70 | 473 | 36 | 438 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515219.1 | 0 | 1 | 473 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-25 | 170 | 425 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-25 | 170 | 425 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-25 | 170 | 425 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-25 | 170 | 425 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-25 | 170 | 425 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
