Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G137400.1 |
Family | CE8 |
Protein Properties | Length: 379 Molecular Weight: 42018.5 Isoelectric Point: 9.1052 |
Chromosome | Chromosome/Scaffold: 08 Start: 38740096 End: 38742010 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 79 | 368 | 0 |
NVSRDGSGDFKTINEALNSIPLRNTRRVILVIKPGIYREKIIIPRTMPFITFQGDANNPPTITGNDTASSSSKDGRPLKTFQSATVAVDANYFVAINIKF ENTVPHTIGSKGGQAVAVRISGTKAAFYNCSFYGDQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYENCYLNSIAKKVASLTAQKRSSASMASGFSFK DSVVTGNGIGLVYLGRAWGDYSRVVFSYTFMDKVVRPQGWSDWGNPKRDARVYYGEYKCSGPEANLTGRVPWARILTDEEAEPFLGTYYV |
Full Sequence |
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Protein Sequence Length: 379 Download |
MASSSYTYIS LIVLVLVICN YSSTTSASSN PGSETEFEKW LGWNVRNHRS KRLAADRSLV 60 MSVLDDNLVI AEKNKVMINV SRDGSGDFKT INEALNSIPL RNTRRVILVI KPGIYREKII 120 IPRTMPFITF QGDANNPPTI TGNDTASSSS KDGRPLKTFQ SATVAVDANY FVAINIKFEN 180 TVPHTIGSKG GQAVAVRISG TKAAFYNCSF YGDQDTLYDH KGLHYFNNCF IQGSVDFIFG 240 YGRSLYENCY LNSIAKKVAS LTAQKRSSAS MASGFSFKDS VVTGNGIGLV YLGRAWGDYS 300 RVVFSYTFMD KVVRPQGWSD WGNPKRDARV YYGEYKCSGP EANLTGRVPW ARILTDEEAE 360 PFLGTYYVEG DTWLVNPW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 4.0e-102 | 76 | 374 | 299 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-102 | 78 | 374 | 299 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-106 | 77 | 374 | 300 | + pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-135 | 1 | 377 | 379 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 9.0e-136 | 33 | 376 | 350 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF22736.1 | 0 | 9 | 377 | 3 | 379 | pectinesterase family protein [Brachypodium distachyon] |
EMBL | CAN79461.1 | 0 | 33 | 377 | 32 | 381 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 61 | 377 | 92 | 411 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 37 | 377 | 69 | 410 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 86 | 374 | 1 | 287 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 80 | 374 | 11 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4.99997e-41 | 80 | 374 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-18 | 74 | 251 | 5 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-18 | 74 | 251 | 5 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-18 | 74 | 362 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |