Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G138100.1 |
Family | CE8 |
Protein Properties | Length: 359 Molecular Weight: 40276.4 Isoelectric Point: 8.9167 |
Chromosome | Chromosome/Scaffold: 08 Start: 38848033 End: 38851829 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 40 | 331 | 0 |
IRVDQSGKGDFKTVQKAIDSIPSNNKKWIRILISPGVFREKVTIPYDKPCIFLEGAGRLLTRIEWNSHMRTCDSATLTSFPDSIVAKGITFKNFYNVPLA TIPNIKNTVKPALAARIYGDKSAFYNCAFFGLQDTLWDVQGRHYFKNCYIEGAIDFIFGSGQSIYESCEINLTIGKYAPQYPNGYITAQGRNSSDDPSGF VFKSCVFSGTGKTYLGRAYGAYSRVIIYKSVMTDIIVASGWDAWTYVHHEGNLMYAENSCRGAGANTSKRVPWLRKLSASQLSQFVNISYID |
Full Sequence |
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Protein Sequence Length: 359 Download |
MQCLLVFMLI VLLLVCFSIC EAFECEFDAE NHQFKVADTI RVDQSGKGDF KTVQKAIDSI 60 PSNNKKWIRI LISPGVFREK VTIPYDKPCI FLEGAGRLLT RIEWNSHMRT CDSATLTSFP 120 DSIVAKGITF KNFYNVPLAT IPNIKNTVKP ALAARIYGDK SAFYNCAFFG LQDTLWDVQG 180 RHYFKNCYIE GAIDFIFGSG QSIYESCEIN LTIGKYAPQY PNGYITAQGR NSSDDPSGFV 240 FKSCVFSGTG KTYLGRAYGA YSRVIIYKSV MTDIIVASGW DAWTYVHHEG NLMYAENSCR 300 GAGANTSKRV PWLRKLSASQ LSQFVNISYI DKEGWIDKLP KHVLNLGHKK NSKLKFMA* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 6.0e-89 | 27 | 336 | 321 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 3.0e-91 | 40 | 336 | 297 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 3.0e-93 | 32 | 336 | 306 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 8.0e-123 | 26 | 340 | 315 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 7.0e-139 | 37 | 340 | 304 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 1 | 340 | 1 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515255.1 | 0 | 6 | 340 | 8 | 335 | Pectinesterase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 20 | 340 | 347 | 660 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 27 | 341 | 25 | 340 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 36 | 340 | 36 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.99995e-41 | 36 | 336 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-31 | 42 | 312 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-17 | 50 | 340 | 18 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-17 | 50 | 340 | 18 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-17 | 50 | 340 | 18 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |