Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G162500.1 |
Family | PL1 |
Protein Properties | Length: 415 Molecular Weight: 45404.5 Isoelectric Point: 8.3581 |
Chromosome | Chromosome/Scaffold: 08 Start: 42985192 End: 42986819 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 129 | 334 | 0 |
VVFAHDMVIKLKQELLVNSFKTIDGRGANVHIAGGPCITIQYVSNVIIHGISIHDCKRGGNAYVRDSPSHYGWRTISDGDAVSIFGGSHVWVDHCSLSNC TDGLVDAIQGSTAITISNNYMTHHNKVMLLGHSDSYKQDKNTQVTIAFNYFGEGLVQRMPSFQLVYRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQG NRFAAP |
Full Sequence |
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Protein Sequence Length: 415 Download |
MPIPFSLILL IMLPLLQAPT SIFSSPLQHP DLVVQQVIES IMNGTIARRN LGFLSCGTGN 60 PIDDCWRCDP HWEKNRQRLA DCAIGFGKHA IGGKHGKIYV VTDPSDRDPI NPKPGTLRHA 120 AIQVEPLWVV FAHDMVIKLK QELLVNSFKT IDGRGANVHI AGGPCITIQY VSNVIIHGIS 180 IHDCKRGGNA YVRDSPSHYG WRTISDGDAV SIFGGSHVWV DHCSLSNCTD GLVDAIQGST 240 AITISNNYMT HHNKVMLLGH SDSYKQDKNT QVTIAFNYFG EGLVQRMPSF QLVYRCRHGY 300 FHVVNNDYTH WEMYAIGGSA DPTINSQGNR FAAPNNVNSK EVTKHEDAPQ SKWKEWNWRS 360 EGDLMLNGAF FTASGKGTSS SYAKASSLGA RPSSLVNSLT AGAGALVCKK GSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 140 | 331 | 204 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-70 | 140 | 331 | 215 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-78 | 134 | 335 | 213 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU21247.1 | 0 | 19 | 414 | 18 | 406 | unknown [Glycine max] |
DDBJ | BAB59066.1 | 0 | 25 | 414 | 29 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | NP_564906.1 | 0 | 19 | 414 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002285340.1 | 0 | 24 | 414 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311747.1 | 0 | 18 | 414 | 15 | 402 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 407 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 407 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 135 | 331 | 56 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000001 | 143 | 332 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000002 | 150 | 308 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |