y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G162500.2 |
Family | PL1 |
Protein Properties | Length: 409 Molecular Weight: 44666.7 Isoelectric Point: 8.3604 |
Chromosome | Chromosome/Scaffold: 08 Start: 42985110 End: 42986954 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 129 | 328 | 0 |
VVFAHDMVIKLKQELLVNSFKTIDGRGANVHIAGGPCITIQYVSNVIIHGISIHDCKRGGNAYVRDSPSHYGWRTISDGDAVSIFGGSHVWVDHCSLSNC TDGLVDAIQGSTAITISNNYMTHHNKVMLLGHSDSYKQDKNTQVTIAFNYFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFAAP |
Full Sequence |
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Protein Sequence Length: 409 Download |
MPIPFSLILL IMLPLLQAPT SIFSSPLQHP DLVVQQVIES IMNGTIARRN LGFLSCGTGN 60 PIDDCWRCDP HWEKNRQRLA DCAIGFGKHA IGGKHGKIYV VTDPSDRDPI NPKPGTLRHA 120 AIQVEPLWVV FAHDMVIKLK QELLVNSFKT IDGRGANVHI AGGPCITIQY VSNVIIHGIS 180 IHDCKRGGNA YVRDSPSHYG WRTISDGDAV SIFGGSHVWV DHCSLSNCTD GLVDAIQGST 240 AITISNNYMT HHNKVMLLGH SDSYKQDKNT QVTIAFNYFG EGLVQRMPRC RHGYFHVVNN 300 DYTHWEMYAI GGSADPTINS QGNRFAAPNN VNSKEVTKHE DAPQSKWKEW NWRSEGDLML 360 NGAFFTASGK GTSSSYAKAS SLGARPSSLV NSLTAGAGAL VCKKGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-28 | 140 | 325 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-72 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-81 | 134 | 329 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU21247.1 | 0 | 19 | 408 | 18 | 406 | unknown [Glycine max] |
DDBJ | BAB59066.1 | 0 | 25 | 408 | 29 | 409 | pectate lyase [Salix gilgiana] |
DDBJ | BAE48664.1 | 0 | 18 | 408 | 23 | 413 | Pectate lyase [Prunus mume] |
RefSeq | NP_564906.1 | 0 | 19 | 408 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002285340.1 | 0 | 24 | 408 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 401 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 401 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 135 | 325 | 56 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000008 | 143 | 326 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000000001 | 150 | 302 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |