Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G203900.2 |
Family | PL1 |
Protein Properties | Length: 336 Molecular Weight: 37166.9 Isoelectric Point: 6.9794 |
Chromosome | Chromosome/Scaffold: 08 Start: 48942885 End: 48944810 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 118 | 324 | 0 |
IQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHVWVD HNSLSNCNDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFTAP |
Full Sequence |
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Protein Sequence Length: 336 Download |
MPLPSLSLLF LFTSLLIPSP ISSSPVQDPE LVVEDVHRAI NASRRNLGYL SCGTGNPIDD 60 CWRCDPNWEK NRQRLADCAI GFGKNAIGGR DGKIYVVTDS SDNDAVNPKP GTLRHAVIQD 120 EPLWIIFARD MTIRLKEELI MNSFKTIDGR GASVHIAGGP CITIQYVTNI IIHGLNIHDC 180 KQGGNAMVRD SPRHYGWRTI SDGDGVSIFG GSHVWVDHNS LSNCNDGLVD AIHGSTAITI 240 SNNYMTHHDK VMLLGHSDSY TQDKNMQVTI AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH 300 WEMYAIGGSA NPTINSQGNR FTAPNDRFSK EVKTH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 143 | 321 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-72 | 136 | 321 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-79 | 130 | 325 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90475.1 | 0 | 27 | 335 | 34 | 342 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90477.1 | 0 | 27 | 335 | 34 | 342 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90478.1 | 0 | 27 | 335 | 34 | 342 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90479.1 | 0 | 27 | 335 | 34 | 342 | pectate lyase [Gossypium barbadense] |
RefSeq | XP_002322215.1 | 0 | 18 | 335 | 17 | 334 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 56 | 332 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 56 | 332 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 75 | 321 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000001 | 190 | 333 | 128 | 299 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000001 | 190 | 333 | 128 | 299 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |