Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G203900.4 |
Family | PL1 |
Protein Properties | Length: 275 Molecular Weight: 29998.4 Isoelectric Point: 7.6798 |
Chromosome | Chromosome/Scaffold: 08 Start: 48943065 End: 48944810 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 2 | 194 | 0 |
TIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHNSLSNCNDGLVDA IHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFTAP |
Full Sequence |
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Protein Sequence Length: 275 Download |
MTIRLKEELI MNSFKTIDGR GASVHIAGGP CITIQYVTNI IIHGLNIHDC KQGGNAMVRD 60 SPRHYGWRTI SDGDGVSIFG GSHVWVDHNS LSNCNDGLVD AIHGSTAITI SNNYMTHHDK 120 VMLLGHSDSY TQDKNMQVTI AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA 180 NPTINSQGNR FTAPNDRFSK EVTKHEDAPE SDWKSWNWRS EGDLMVNGAF FTASGAGASS 240 SYSKASSLGA RPSSLVATIT TNAGSLNCKK GSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 13 | 191 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-72 | 6 | 191 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-78 | 1 | 195 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90475.1 | 0 | 1 | 274 | 138 | 411 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90476.1 | 0 | 1 | 274 | 138 | 411 | pectate lyase [Gossypium raimondii] |
GenBank | ADB90477.1 | 0 | 1 | 274 | 138 | 411 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90478.1 | 0 | 1 | 274 | 138 | 411 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90479.1 | 0 | 1 | 274 | 138 | 411 | pectate lyase [Gossypium barbadense] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 264 | 76 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 264 | 76 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pe9_B | 7e-18 | 60 | 265 | 128 | 358 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pe9_A | 7e-18 | 60 | 265 | 128 | 358 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1ooc_B | 7e-18 | 60 | 265 | 128 | 358 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR711159 | 265 | 8 | 272 | 0 |
ES828007 | 275 | 1 | 275 | 0 |
EX663952 | 274 | 1 | 274 | 0 |
ES794896 | 257 | 14 | 270 | 0 |
JK802766 | 231 | 1 | 231 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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