| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G212400.1 |
| Family | CE8 |
| Protein Properties | Length: 164 Molecular Weight: 17495.1 Isoelectric Point: 10.0401 |
| Chromosome | Chromosome/Scaffold: 08 Start: 49877547 End: 49878308 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 31 | 163 | 4.7e-34 |
| KVRQGGGGEFNSVKKAIESVALGNTKRVIISIGPGVYKEKIKIERGKPFITLLGNPKNMPNLTFGGTAKEYGTVNSATLIAESNYFVAANLNIVNLASKP EGGKTIGGQVVALRVSGDRSPIYNYNIYGFQET | |||
| Full Sequence |
|---|
| Protein Sequence Length: 164 Download |
| MLEGIIKPVK ERGDSLDPEL IQAESNPKVI KVRQGGGGEF NSVKKAIESV ALGNTKRVII 60 SIGPGVYKEK IKIERGKPFI TLLGNPKNMP NLTFGGTAKE YGTVNSATLI AESNYFVAAN 120 LNIVNLASKP EGGKTIGGQV VALRVSGDRS PIYNYNIYGF QET* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02671 | PLN02671 | 6.0e-23 | 28 | 163 | 145 | + pectinesterase | ||
| PLN02634 | PLN02634 | 2.0e-25 | 25 | 163 | 146 | + probable pectinesterase | ||
| PLN02773 | PLN02773 | 2.0e-27 | 28 | 163 | 147 | + pectinesterase | ||
| PLN02682 | PLN02682 | 5.0e-28 | 29 | 163 | 143 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 3.0e-78 | 6 | 163 | 158 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU13228.1 | 0 | 8 | 163 | 49 | 203 | unknown [Glycine max] |
| GenBank | ACU14235.1 | 0 | 6 | 163 | 47 | 203 | unknown [Glycine max] |
| GenBank | ACU18534.1 | 0 | 8 | 163 | 49 | 203 | unknown [Glycine max] |
| RefSeq | XP_002318197.1 | 0 | 6 | 163 | 44 | 200 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002336983.1 | 0 | 6 | 163 | 44 | 200 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0.000000002 | 27 | 163 | 7 | 137 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0.00001 | 32 | 163 | 7 | 133 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| CO110656 | 163 | 1 | 163 | 0 |
| CO107126 | 163 | 1 | 163 | 0 |
| CO130641 | 163 | 1 | 163 | 0 |
| CO120847 | 162 | 2 | 163 | 0 |
| JG840812 | 144 | 1 | 144 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |