Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G212500.1 |
Family | CE8 |
Protein Properties | Length: 370 Molecular Weight: 40201.7 Isoelectric Point: 7.7898 |
Chromosome | Chromosome/Scaffold: 08 Start: 49905540 End: 49907221 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 72 | 355 | 0 |
KVMQGGGGEFDTITKAIESVPSGNTKRVIISIGPGSYKEKIRIERNKPFITFLGDPKSMPNLTFDGTAKQYGTVDSATLITECSYFVGANLNIVNTAPKP DGKMVGAQAVALRVSGDRSAFYNCKIIGFQDTLCDDKGNHFFKDCHIRGTVDFIFGSGKSLYLNTKIFVEGDPGLTVITAQARESSSEDTGYSFVHGSIS GTAKNAFLGRAWKSSPRVVYAYTEMGNVVNPAGWSHNLQPERAKTVYYGEYKCTGQGANPKTREPFVKQLPDAEAQPFLVLDYV |
Full Sequence |
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Protein Sequence Length: 370 Download |
MEGKRIESSE VYVAAMCVSI LLFAPVGVSQ PIPADKSQVN AWFNGIIKPV KERGNTLDPE 60 LVEAETEPRI IKVMQGGGGE FDTITKAIES VPSGNTKRVI ISIGPGSYKE KIRIERNKPF 120 ITFLGDPKSM PNLTFDGTAK QYGTVDSATL ITECSYFVGA NLNIVNTAPK PDGKMVGAQA 180 VALRVSGDRS AFYNCKIIGF QDTLCDDKGN HFFKDCHIRG TVDFIFGSGK SLYLNTKIFV 240 EGDPGLTVIT AQARESSSED TGYSFVHGSI SGTAKNAFLG RAWKSSPRVV YAYTEMGNVV 300 NPAGWSHNLQ PERAKTVYYG EYKCTGQGAN PKTREPFVKQ LPDAEAQPFL VLDYVEATKW 360 LLPSPTVPN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 3.0e-80 | 69 | 361 | 303 | + pectinesterase | ||
PLN02304 | PLN02304 | 9.0e-84 | 70 | 364 | 303 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 8.0e-84 | 70 | 361 | 292 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-93 | 77 | 363 | 294 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 20 | 365 | 349 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38547.1 | 0 | 13 | 365 | 1 | 363 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277202.1 | 0 | 32 | 365 | 31 | 364 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 7 | 365 | 4 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 31 | 365 | 28 | 363 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511045.1 | 0 | 29 | 366 | 30 | 366 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 8.99999e-40 | 68 | 361 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-38 | 73 | 361 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 9e-21 | 64 | 349 | 1 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 9e-21 | 64 | 349 | 1 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 9e-21 | 64 | 349 | 1 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |