Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G212600.1 |
Family | CE8 |
Protein Properties | Length: 194 Molecular Weight: 21478.3 Isoelectric Point: 6.9197 |
Chromosome | Chromosome/Scaffold: 08 Start: 49938728 End: 49940336 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 3 | 169 | 0 |
SAPRPNGKMVGAQAVSLRVSGDKSAFYNCKIIGFQDTLCDDRGNHFFKDCHIRGTVDFIFGSVTSLYLNSKIFVEGDPEGDLEMAIIIAQVRESSSEDKS YSFVHGRITGTSKDVFLGRAWKSSPRVVYSYTEMDEIVHPGGWSSNRQPERAETVYYGDYKCMGKGA |
Full Sequence |
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Protein Sequence Length: 194 Download |
MNSAPRPNGK MVGAQAVSLR VSGDKSAFYN CKIIGFQDTL CDDRGNHFFK DCHIRGTVDF 60 IFGSVTSLYL NSKIFVEGDP EGDLEMAIII AQVRESSSED KSYSFVHGRI TGTSKDVFLG 120 RAWKSSPRVV YSYTEMDEIV HPGGWSSNRQ PERAETVYYG DYKCMGKGAT PPFLVLDYVE 180 GTKWLLPPPT VPK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 4.0e-48 | 6 | 185 | 196 | + pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-48 | 13 | 185 | 189 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 8.0e-55 | 1 | 187 | 206 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-59 | 2 | 187 | 202 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 1.0e-108 | 2 | 189 | 204 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78808.1 | 0 | 1 | 193 | 138 | 344 | hypothetical protein [Vitis vinifera] |
EMBL | CBI38547.1 | 0 | 1 | 189 | 163 | 363 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 1 | 193 | 167 | 373 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277388.1 | 0 | 1 | 193 | 163 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318197.1 | 0 | 2 | 189 | 163 | 363 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9e-23 | 15 | 169 | 113 | 273 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-19 | 15 | 185 | 109 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000003 | 10 | 170 | 124 | 312 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000003 | 10 | 170 | 124 | 312 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000003 | 10 | 170 | 124 | 312 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO122859 | 180 | 31 | 194 | 0 |
CO120596 | 179 | 32 | 194 | 0 |
CO122709 | 159 | 1 | 159 | 0 |
CO110086 | 178 | 33 | 194 | 0 |
CO101770 | 177 | 34 | 194 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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