Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G212700.2 |
Family | CE8 |
Protein Properties | Length: 320 Molecular Weight: 34824.4 Isoelectric Point: 5.2512 |
Chromosome | Chromosome/Scaffold: 08 Start: 49948380 End: 49950171 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 72 | 312 | 0 |
KVMQGGGGEFDTITKAIESVPSGNAKRVIISIGPGSYKEKIRIERNKPFITLLGDPKNMPNLTFDGTAKQYGTVDSATLITESNYFVGANLNIVNSAPRP DGKMVGAQAVALRVSGDRSAFYNCKIIGFQDTLCDDRGNHFFKDCHIRGTVDFIFGSGTSLYLNTEIFVVGDPEGDPEMAIITAQARESSSEDTGYSFVH GRITGTAKDVFLGRAWKSSPRVVYSYTEMDEIVHPGGWSSN |
Full Sequence |
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Protein Sequence Length: 320 Download |
MDGKRIEGNE VYALAMCASI LLFAPIVVSQ PIPADKSQVE AWFNGIIKPV KERGTTLDPE 60 LVQAETEPRI IKVMQGGGGE FDTITKAIES VPSGNAKRVI ISIGPGSYKE KIRIERNKPF 120 ITLLGDPKNM PNLTFDGTAK QYGTVDSATL ITESNYFVGA NLNIVNSAPR PDGKMVGAQA 180 VALRVSGDRS AFYNCKIIGF QDTLCDDRGN HFFKDCHIRG TVDFIFGSGT SLYLNTEIFV 240 VGDPEGDPEM AIITAQARES SSEDTGYSFV HGRITGTAKD VFLGRAWKSS PRVVYSYTEM 300 DEIVHPGGWS SNRQPERAE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 3.0e-64 | 69 | 317 | 259 | + pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-64 | 69 | 309 | 248 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-65 | 70 | 317 | 252 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-76 | 77 | 317 | 248 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 13 | 317 | 308 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38547.1 | 0 | 32 | 317 | 30 | 311 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277202.1 | 0 | 32 | 317 | 31 | 312 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 17 | 317 | 13 | 315 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 13 | 317 | 5 | 311 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 13 | 317 | 6 | 312 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-31 | 68 | 309 | 7 | 249 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-29 | 73 | 310 | 7 | 246 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-22 | 64 | 238 | 1 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-22 | 64 | 238 | 1 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-22 | 64 | 238 | 1 | 190 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |