Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G212800.1 |
Family | CE8 |
Protein Properties | Length: 311 Molecular Weight: 34452.5 Isoelectric Point: 8.8492 |
Chromosome | Chromosome/Scaffold: 08 Start: 49986581 End: 49989750 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 127 | 306 | 0 |
YFTLRVSGDRSAFSNCKIIGFPDTLCNDSGNHFFKDCHIRGTVDFIFGSGTSLYLNSKIFVEGDLERDPKMAVITAQARESSSKDTGYSFVHGRIIGTAK DIFLGRAWKSSPRVVYSYTEMDEIVHPGGWSSNHQPGRAETVYYKEYKCTGKGATPATRKKFVKQLSGAEVEPFLILDYV |
Full Sequence |
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Protein Sequence Length: 311 Download |
MCLSILLFAP IVVSQLIPVD KSKVEAWFNG IIKPVKERGK TLYPELVKAE TEPRIIMVMQ 60 DGDGEFDNIT KAIESVPLGN AKRVIISIGP GSYKEKIRIE RNKPFITLTA KQYGTIDSAT 120 LTTESSYFTL RVSGDRSAFS NCKIIGFPDT LCNDSGNHFF KDCHIRGTVD FIFGSGTSLY 180 LNSKIFVEGD LERDPKMAVI TAQARESSSK DTGYSFVHGR IIGTAKDIFL GRAWKSSPRV 240 VYSYTEMDEI VHPGGWSSNH QPGRAETVYY KEYKCTGKGA TPATRKKFVK QLSGAEVEPF 300 LILDYVEGTK * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02480 | PLN02480 | 5.0e-57 | 54 | 310 | 293 | + Probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-63 | 54 | 310 | 304 | + pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-65 | 55 | 308 | 287 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-72 | 62 | 309 | 293 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 2.0e-151 | 5 | 310 | 347 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38548.1 | 0 | 17 | 310 | 34 | 362 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 4 | 310 | 17 | 361 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 4 | 310 | 13 | 357 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 4 | 310 | 14 | 358 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511045.1 | 0 | 4 | 310 | 17 | 359 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-26 | 56 | 308 | 9 | 304 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-25 | 57 | 308 | 6 | 300 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000000002 | 56 | 303 | 7 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000000002 | 56 | 303 | 7 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000000002 | 56 | 303 | 7 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |