Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G213000.1 |
Family | CE8 |
Protein Properties | Length: 368 Molecular Weight: 40135.7 Isoelectric Point: 9.4183 |
Chromosome | Chromosome/Scaffold: 08 Start: 50025345 End: 50026791 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 66 | 353 | 0 |
KVRQGGGGEFNSVKKAIESVALGNTKRVIISIGPGVYKEKIKIERGKPFITLLGNPKNMPNLTFGGTAKEYGTVNSATLIAESNYFVAANLNIVNSAPKP ERGKTVGGQAVALRVSGDRSAIYNCNIYGFQDTLCDDKGNHFFKDCYVSGTVDFIFGGGKSLYLNTDIFVEKREGGGFTVITAQARESSSEDTGYSFVHG SVTGTASNSFLGRAWRSNPRVVYAYTDMSNVVNPAGWTHNNFPERAKTVYYGEYKCKGRGANPSKREPFVKQLSGAEVLPFLALNFIE |
Full Sequence |
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Protein Sequence Length: 368 Download |
MENSEVYAVI CISILLIAPV IVSQQIPADK RQVNAWFEGI IKPVKERGNS LDPELIQAES 60 NPKVIKVRQG GGGEFNSVKK AIESVALGNT KRVIISIGPG VYKEKIKIER GKPFITLLGN 120 PKNMPNLTFG GTAKEYGTVN SATLIAESNY FVAANLNIVN SAPKPERGKT VGGQAVALRV 180 SGDRSAIYNC NIYGFQDTLC DDKGNHFFKD CYVSGTVDFI FGGGKSLYLN TDIFVEKREG 240 GGFTVITAQA RESSSEDTGY SFVHGSVTGT ASNSFLGRAW RSNPRVVYAY TDMSNVVNPA 300 GWTHNNFPER AKTVYYGEYK CKGRGANPSK REPFVKQLSG AEVLPFLALN FIEATKWLLP 360 PPKYEFN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 7.0e-81 | 63 | 358 | 306 | + pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-82 | 64 | 358 | 295 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 5.0e-84 | 67 | 360 | 300 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-93 | 64 | 360 | 305 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 7 | 364 | 360 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38547.1 | 0 | 9 | 362 | 5 | 363 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 8 | 363 | 13 | 369 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277388.1 | 0 | 8 | 363 | 9 | 365 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 2 | 362 | 4 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 6 | 362 | 4 | 363 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4.00001e-41 | 62 | 358 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-35 | 67 | 358 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 5e-19 | 64 | 238 | 7 | 195 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 5e-19 | 64 | 238 | 7 | 195 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 5e-19 | 64 | 238 | 7 | 195 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |