y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G213000.2 |
Family | CE8 |
Protein Properties | Length: 285 Molecular Weight: 31469.9 Isoelectric Point: 9.6946 |
Chromosome | Chromosome/Scaffold: 08 Start: 50025310 End: 50026833 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 66 | 223 | 0 |
KVRQGGGGEFNSVKKAIESVALGNTKRVIISIGPGVYKEKIKIERGKPFITLLGNPKNMPNLTFGGTAKEYGTVNSATLIAESNYFVAANLNIVNSAPKP ERGKTVGGQAVALRVSGDRSAIYNCNIYGFQDTLCDDKGNHFFKDCYVSGTVDFIFGE |
Full Sequence |
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Protein Sequence Length: 285 Download |
MENSEVYAVI CISILLIAPV IVSQQIPADK RQVNAWFEGI IKPVKERGNS LDPELIQAES 60 NPKVIKVRQG GGGEFNSVKK AIESVALGNT KRVIISIGPG VYKEKIKIER GKPFITLLGN 120 PKNMPNLTFG GTAKEYGTVN SATLIAESNY FVAANLNIVN SAPKPERGKT VGGQAVALRV 180 SGDRSAIYNC NIYGFQDTLC DDKGNHFFKD CYVSGTVDFI FGEHGHIRGE ARRWRIYSDN 240 STSERKFIGR HGLFVRAWQR YRNSKQFIFG EGLEEQSKSG LCIY* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 1.0e-38 | 67 | 223 | 158 | + probable pectinesterase | ||
PLN02773 | PLN02773 | 2.0e-42 | 63 | 227 | 182 | + pectinesterase | ||
PLN02634 | PLN02634 | 8.0e-46 | 43 | 222 | 195 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-47 | 64 | 222 | 167 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 8.0e-121 | 7 | 222 | 218 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU14235.1 | 0 | 9 | 222 | 12 | 227 | unknown [Glycine max] |
RefSeq | XP_002309337.1 | 0 | 7 | 222 | 9 | 228 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 6 | 222 | 4 | 224 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 6 | 222 | 5 | 225 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336983.1 | 0 | 6 | 222 | 4 | 224 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-21 | 62 | 222 | 7 | 161 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9e-18 | 67 | 222 | 7 | 157 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 1e-16 | 64 | 223 | 7 | 180 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-16 | 64 | 223 | 7 | 180 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-16 | 64 | 223 | 7 | 180 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |