Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.008G218300.2 |
Family | GH14 |
Protein Properties | Length: 638 Molecular Weight: 72339.1 Isoelectric Point: 5.9446 |
Chromosome | Chromosome/Scaffold: 08 Start: 50463781 End: 50470692 |
Description | beta-amylase 2 |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH14 | 205 | 603 | 0 |
YVKLSTGVINNFCQLADPDGVRQELSHMNSLNVDGVIVDCWWGIVECWNPQKYVWSGYRELFNYIREFKMKIQVVMAFHEYGRTDSADVLISLPNWILEI GKENQDIFFTDREGRRTTEFLSWGIDKERVLNGRTGVEVYFDFMRSFRTEFDDLFAEGLISAVEIGLGPSGELRYPSFSERMGWRYPGIGEFQCYDKYLQ QHLQRAAKLRGHSFWARGPDNAGHYNSRPHETGFFCERGDYDSYYGRFFLHWYAQALMDHADNVLSLANLAFEETKIIVKIPAVYWWYKTSSHAAELTAG YYNPTNQDGYSPVFEVLKKHSVTVKFVCYGLQICSYENDEAFADPEGLSWQVLNSVWDRGLKVAGENTLSCYDKEGCLRIIETAKPRNDPDRRHFSFFV |
Full Sequence |
---|
Protein Sequence Length: 638 Download |
MESQPQPQPQ PRRPRGFAAT AAAAAASVSP TGTPSGSAGA STASSGKGKR EREKEKERTK 60 LRERHRRAIT SRMLAGLRQY GNFPLPARAD MNDVLAALAR EAGWTVEPDG TTYRHSPPPQ 120 HQQHLNCSVK ATLDCQQPVV RIDDSLSPAS LDSVVIAERD TRSEKYPSTS PINSVECLEA 180 DQLIQDVHST EHDNDFTGTQ YVPVYVKLST GVINNFCQLA DPDGVRQELS HMNSLNVDGV 240 IVDCWWGIVE CWNPQKYVWS GYRELFNYIR EFKMKIQVVM AFHEYGRTDS ADVLISLPNW 300 ILEIGKENQD IFFTDREGRR TTEFLSWGID KERVLNGRTG VEVYFDFMRS FRTEFDDLFA 360 EGLISAVEIG LGPSGELRYP SFSERMGWRY PGIGEFQCYD KYLQQHLQRA AKLRGHSFWA 420 RGPDNAGHYN SRPHETGFFC ERGDYDSYYG RFFLHWYAQA LMDHADNVLS LANLAFEETK 480 IIVKIPAVYW WYKTSSHAAE LTAGYYNPTN QDGYSPVFEV LKKHSVTVKF VCYGLQICSY 540 ENDEAFADPE GLSWQVLNSV WDRGLKVAGE NTLSCYDKEG CLRIIETAKP RNDPDRRHFS 600 FFVYQQPSPL VQGVICLPDL DYFIKCMHGD ITGDLVP* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00197 | PLN00197 | 2.0e-102 | 202 | 609 | 416 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 2.0e-117 | 202 | 589 | 393 | + beta-amylase | ||
PLN02801 | PLN02801 | 3.0e-141 | 190 | 630 | 447 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 68 | 635 | 584 | + beta-amylase | ||
PLN02905 | PLN02905 | 0 | 68 | 635 | 607 | + beta-amylase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI29216.1 | 0 | 59 | 637 | 19 | 612 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199343.1 | 0 | 8 | 631 | 35 | 684 | BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002270680.1 | 0 | 52 | 637 | 70 | 670 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304400.1 | 0 | 5 | 629 | 38 | 666 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519919.1 | 0 | 2 | 629 | 22 | 664 | Beta-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdq_A | 0 | 200 | 591 | 10 | 401 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1btc_A | 0 | 200 | 591 | 6 | 397 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
PDB | 1byd_A | 0 | 200 | 591 | 10 | 401 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
PDB | 1byc_A | 0 | 200 | 591 | 10 | 401 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
PDB | 1byb_A | 0 | 200 | 591 | 10 | 401 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EB439624 | 285 | 248 | 532 | 0 |
JG649066 | 276 | 246 | 521 | 0 |
HO807244 | 277 | 353 | 629 | 0 |
GO367915 | 286 | 213 | 498 | 0 |
EY757606 | 284 | 248 | 528 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|