y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G235300.1 |
Family | CE8 |
Protein Properties | Length: 352 Molecular Weight: 39108.3 Isoelectric Point: 8.455 |
Chromosome | Chromosome/Scaffold: 08 Start: 52130356 End: 52132742 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 341 | 0 |
ITVDINGLGHFRSVQDAVDAVPENNRKNVLIRISAGYYIEKVVVPATKPYIMMQGAGREVTFIEWHDRASDLGSNGQQLRTYQTASVTVYANYFSARNIS FKNTAPAPMPGMQGWQAVALRISGDKAYFSGCGFYGAQALFECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRNSPDEKTGFAFVNCNVTGTG PLYVGRAMGQYSRIVYAYTYFDDLVAHGGWDDWDHVSNKNKTAFFGVYKCWGPGAAAVRGVSWARELKFDEAHPFLAKSFVN |
Full Sequence |
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Protein Sequence Length: 352 Download |
MESCSFLLFY FCFVFVLASF FCPAPSLSVA TRPVVNQTAC TTNSTRHRHK WIGPIGHRLI 60 TVDINGLGHF RSVQDAVDAV PENNRKNVLI RISAGYYIEK VVVPATKPYI MMQGAGREVT 120 FIEWHDRASD LGSNGQQLRT YQTASVTVYA NYFSARNISF KNTAPAPMPG MQGWQAVALR 180 ISGDKAYFSG CGFYGAQALF ECYIEGSIDF IFGNGRSMYK DCELHSIATR FGSIAAHDRN 240 SPDEKTGFAF VNCNVTGTGP LYVGRAMGQY SRIVYAYTYF DDLVAHGGWD DWDHVSNKNK 300 TAFFGVYKCW GPGAAAVRGV SWARELKFDE AHPFLAKSFV NGRHWIAPWD A* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 3.0e-88 | 58 | 348 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-94 | 60 | 351 | 310 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-108 | 56 | 346 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-125 | 17 | 348 | 358 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 17 | 351 | 348 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD65006.1 | 0 | 32 | 351 | 13 | 344 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 13 | 351 | 7 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 14 | 351 | 16 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002266321.1 | 0 | 41 | 351 | 36 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 45 | 348 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-37 | 60 | 346 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-28 | 65 | 346 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_B | 0.00000000000006 | 70 | 226 | 18 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_A | 0.00000000000006 | 70 | 226 | 18 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt6_B | 0.00000000000006 | 70 | 226 | 18 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |