| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G271800.1 |
| Family | PL1 |
| Protein Properties | Length: 380 Molecular Weight: 41917.3 Isoelectric Point: 9.7271 |
| Chromosome | Chromosome/Scaffold: 08 Start: 55095640 End: 55096878 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 103 | 301 | 0 |
| WITFKNSMTITLQRPLLLSSFTAIDGRGVDVHITGAGCLLVYQVTGIIIHGLRIHHCKAQPPSTLMGPNAKVIPLGQMDGDAIRLVTARKVWIDHNTLYE CQDGLLDVTRGSTNVTVSNNWFRNQDKVMLLGHDDGHLRDRNMMVTVIFNHFGPNCNQRIVRHGYAHVANNFYQGWEQYAIGGSMSPSIKSEANFFVAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 380 Download |
| MATTLSRCFT LALFMVILMA SISSSLANMA NMNVVDKCWG GNPLWRSQRQ QLAKCSVGFA 60 GKMINNIGKD VVKYKVTDPS DDPLSPKSGT LRYGTTMIKG KVWITFKNSM TITLQRPLLL 120 SSFTAIDGRG VDVHITGAGC LLVYQVTGII IHGLRIHHCK AQPPSTLMGP NAKVIPLGQM 180 DGDAIRLVTA RKVWIDHNTL YECQDGLLDV TRGSTNVTVS NNWFRNQDKV MLLGHDDGHL 240 RDRNMMVTVI FNHFGPNCNQ RIVRHGYAHV ANNFYQGWEQ YAIGGSMSPS IKSEANFFVA 300 PNDVGNKEVT WRKGEKGLWK FYSVGDVLKN GASFNKQTGV DGAKPNYSQE QNFKVVNAMF 360 VKELTSESGV LQCSRGLIC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-22 | 88 | 298 | 231 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-51 | 122 | 298 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-60 | 110 | 302 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 63 | 379 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 25 | 379 | 12 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 32 | 379 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 32 | 379 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 9 | 309 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 33 | 371 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 33 | 371 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.000000000000002 | 118 | 334 | 128 | 367 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.000000000009 | 183 | 302 | 144 | 291 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jrg_B | 0.000000000009 | 183 | 302 | 144 | 291 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
