| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.008G274700.1 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 51917.1 Isoelectric Point: 5.8933 |
| Chromosome | Chromosome/Scaffold: 08 Start: 55295149 End: 55298256 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 84 | 431 | 0 |
| DGGAQLIVPPGKWLTGSFNLTSHFTLFVHKDAVILGSQDESEWPPVALLPSYGRGRDAPSGRLSSLIFGTNLTDVVITGNNGAIDGQGSYWWKLFRDNKM TVTRPYMIEIMYSKHVQISNLTLVNSPSWNVHPIYSSDIIIQHLTVFAPVDSPNTDGIDPDSCTNTRIEDSFVVSGDDCIAVKSGWDEYGIKFNMPTKQL VIRRFACISPSSATIALGSEMSGGIEDVRVEDVTAINTESGVRIKTGVGRGAYVKDVYVRNMTLNTMKYVFWMTGDYGSHPDAEFDQNAFPVIKGINYRD IVADNVTQSAQLDGIGKHPFTDICISNVNIKLAAKPKGVQWNCSDVQG | |||
| Full Sequence |
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| Protein Sequence Length: 475 Download |
| MEFSRKSQVF ETLISAIFLL ELLRPNVAEF RAVGLATSTI TFPALNCRKH SAVLTDFGGI 60 GDGKTSNTKA FEAAIMNLSQ VAPDGGAQLI VPPGKWLTGS FNLTSHFTLF VHKDAVILGS 120 QDESEWPPVA LLPSYGRGRD APSGRLSSLI FGTNLTDVVI TGNNGAIDGQ GSYWWKLFRD 180 NKMTVTRPYM IEIMYSKHVQ ISNLTLVNSP SWNVHPIYSS DIIIQHLTVF APVDSPNTDG 240 IDPDSCTNTR IEDSFVVSGD DCIAVKSGWD EYGIKFNMPT KQLVIRRFAC ISPSSATIAL 300 GSEMSGGIED VRVEDVTAIN TESGVRIKTG VGRGAYVKDV YVRNMTLNTM KYVFWMTGDY 360 GSHPDAEFDQ NAFPVIKGIN YRDIVADNVT QSAQLDGIGK HPFTDICISN VNIKLAAKPK 420 GVQWNCSDVQ GVANRVSPEP CNLLPRKEID CPFPKDRLPI EDVQLKTCSI SGNF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-18 | 57 | 431 | 389 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-25 | 54 | 438 | 401 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-26 | 150 | 429 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-27 | 37 | 414 | 392 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 4.0e-53 | 52 | 423 | 395 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU17976.1 | 0 | 13 | 469 | 15 | 470 | unknown [Glycine max] |
| RefSeq | NP_190464.1 | 0 | 17 | 468 | 10 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002327490.1 | 0 | 35 | 469 | 15 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 24 | 474 | 35 | 479 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 4 | 469 | 7 | 470 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.00053e-42 | 54 | 416 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.00053e-42 | 54 | 416 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.00053e-42 | 54 | 416 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.00053e-42 | 54 | 416 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000002 | 96 | 345 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FC906391 | 300 | 42 | 341 | 0 |
| DY294251 | 422 | 42 | 448 | 0 |
| DY257045 | 326 | 95 | 420 | 0 |
| CO097594 | 267 | 63 | 328 | 0 |
| ES810566 | 333 | 139 | 467 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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