| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.009G036700.1 |
| Family | GH28 |
| Protein Properties | Length: 496 Molecular Weight: 55491.4 Isoelectric Point: 8.2141 |
| Chromosome | Chromosome/Scaffold: 09 Start: 2701971 End: 2705238 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 110 | 455 | 0 |
| GGAQLNVPPGKWLTAPFNLTSHMTLFLAEDAEILGIQDEKRWALMPPLPSYGYGREHNGSRYGSLIHGQNLRDVVITGHNGTINGQGQSWWKKYRQKLLN HSRGPLVQIMWSSDIVISDITLRDSPFWTFHPYDCKNVTVRNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDAVAIKSGWDQYGVAYGRPSRNI LIRNLIIRSMVSAGISIGSEMSGGVSNVTVENVLVWSSRRAVRIKTAVGRGGYVRDITYRNLTFDNARVGIVIKTDYNEHPDDDFDRKALPIIRDISFTE IHGHGVRVPVRIHGSKDIPIRNVTFRDISIGITYKKKHIFQCAFVE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 496 Download |
| MVETLPVGRF QLQQQRLELK RWIPAFLSSH KTLFVLLWIA AFGSVFFWQW NIGGSGFSIF 60 ANVGPGRPMP KMRPFAFNLT DFGGVGDGVA DETAAFERAI LAISKFGKRG GAQLNVPPGK 120 WLTAPFNLTS HMTLFLAEDA EILGIQDEKR WALMPPLPSY GYGREHNGSR YGSLIHGQNL 180 RDVVITGHNG TINGQGQSWW KKYRQKLLNH SRGPLVQIMW SSDIVISDIT LRDSPFWTFH 240 PYDCKNVTVR NVTILAPIFE APNTDGIDPD SCEDMVIEDC YISVGDDAVA IKSGWDQYGV 300 AYGRPSRNIL IRNLIIRSMV SAGISIGSEM SGGVSNVTVE NVLVWSSRRA VRIKTAVGRG 360 GYVRDITYRN LTFDNARVGI VIKTDYNEHP DDDFDRKALP IIRDISFTEI HGHGVRVPVR 420 IHGSKDIPIR NVTFRDISIG ITYKKKHIFQ CAFVEGRVIG TIFPAPCENL DRYDEEERLV 480 KLSAAQNVTD IDYDI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 8.0e-22 | 77 | 456 | 389 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 4.0e-24 | 65 | 467 | 425 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-31 | 76 | 439 | 375 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-33 | 175 | 446 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-59 | 76 | 398 | 362 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 1 | 494 | 1 | 508 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 1 | 494 | 1 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 1 | 494 | 1 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 1 | 494 | 1 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 1 | 494 | 2 | 493 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 70 | 439 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 70 | 439 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 70 | 439 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 70 | 439 | 21 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-18 | 121 | 439 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
