Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G227700.1 |
Family | PL4 |
Protein Properties | Length: 676 Molecular Weight: 77538.8 Isoelectric Point: 6.4483 |
Chromosome | Chromosome/Scaffold: 09 Start: 17855218 End: 17861574 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 46 | 657 | 0 |
VRLHIQDRYVVMDNGIVQVSLSKPGGIVTGIRYNGIDNLLEVRNKETNRGYWDLHWNEIGGKGIFDVIQGTSFRVIVENEEQVEISFTRTWNHSLEGKYI PLNIDKRFIMLRGSSGFYSYAIYEHFREWPGFELGETRITFKLRKDKFQYMAVADNRQRYMPFPDDRSNGRGIPLAYPEAVLLVNPLDQRLTGEVDDKYQ YSCENKDLRVHGWICFDPPVGFWQITPSDEFRSGGPLKQNLSSHVGPTTLAMFLSSHYAGKYMVPQFEAGEPWKKVFGPIFMYFNSAAYGNDPLLLWEDA KIKMMVEVQSWPYSFPASEDFPKSEQRGNANGRILIQDRYISNDCVIASGAYVGLAPPGDAGSWQMESKNYQFWTQANENGFFSIRNIRPGDYNLYAWVP GFIGDYRHEAVITIISGCNIEMGDVIYEPPRDGPTLWEIGIPDRSAAEFYVPDPDPKYINRLFVNHTDRFRQYGLWERYTELYPEGDLVYKIGVSDYRKD WFFAQVVRKIGDNAYQGTTWKIKFELDNVDWNGIYKLRVALASATLAELQVRVNDPNSNRPLFTTGLIGRDNAIARHGIHGIYKLYNVDIPGTRFVKGEN TIFLKQPRCNSP |
Full Sequence |
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Protein Sequence Length: 676 Download |
MTSTLRRIID CFSDCSGCKT CKGNARQDML NMNQDTNCTP MLTQGVRLHI QDRYVVMDNG 60 IVQVSLSKPG GIVTGIRYNG IDNLLEVRNK ETNRGYWDLH WNEIGGKGIF DVIQGTSFRV 120 IVENEEQVEI SFTRTWNHSL EGKYIPLNID KRFIMLRGSS GFYSYAIYEH FREWPGFELG 180 ETRITFKLRK DKFQYMAVAD NRQRYMPFPD DRSNGRGIPL AYPEAVLLVN PLDQRLTGEV 240 DDKYQYSCEN KDLRVHGWIC FDPPVGFWQI TPSDEFRSGG PLKQNLSSHV GPTTLAMFLS 300 SHYAGKYMVP QFEAGEPWKK VFGPIFMYFN SAAYGNDPLL LWEDAKIKMM VEVQSWPYSF 360 PASEDFPKSE QRGNANGRIL IQDRYISNDC VIASGAYVGL APPGDAGSWQ MESKNYQFWT 420 QANENGFFSI RNIRPGDYNL YAWVPGFIGD YRHEAVITII SGCNIEMGDV IYEPPRDGPT 480 LWEIGIPDRS AAEFYVPDPD PKYINRLFVN HTDRFRQYGL WERYTELYPE GDLVYKIGVS 540 DYRKDWFFAQ VVRKIGDNAY QGTTWKIKFE LDNVDWNGIY KLRVALASAT LAELQVRVND 600 PNSNRPLFTT GLIGRDNAIA RHGIHGIYKL YNVDIPGTRF VKGENTIFLK QPRCNSPFQG 660 FMYDYVRLEG PPTPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.007 | 420 | 447 | 28 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 1.0e-29 | 371 | 469 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 8.0e-54 | 482 | 669 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-78 | 46 | 332 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-104 | 41 | 240 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 41 | 674 | 1 | 647 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172462.2 | 0 | 41 | 673 | 44 | 675 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002306520.1 | 0 | 57 | 672 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 41 | 671 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 41 | 675 | 1 | 637 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479599 | 294 | 41 | 331 | 0 |
GW864372 | 311 | 184 | 494 | 0 |
DY293973 | 350 | 41 | 384 | 0 |
DW479600 | 296 | 41 | 333 | 0 |
DT552229 | 293 | 57 | 345 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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