Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G227800.1 |
Family | PL4 |
Protein Properties | Length: 640 Molecular Weight: 73004.1 Isoelectric Point: 4.5234 |
Chromosome | Chromosome/Scaffold: 09 Start: 17862678 End: 17867654 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 9 | 618 | 0 |
YIQDHYVLMDNGIIQVTISSPDGIVTGIQYNGIDNLLEVEDEEVHRGYWDLVWSKTGSTGTTGTFDVFKGTSFKVVVETEDQVEVSFTRTWDISLEGDVV PLNLDKRFIMLRNSPGFYSYAVFEHLEEWPPFNLPQVRIVFKLRKDKFHYMAVADNRQRFMPLPEDRLLDRGQPLATPEAVLLVNPVEPEFKGEVDDKYQ YSSENKDLKVHGWISLNPPVGFWQITPSSEFRSGGPIKQNLTSHVGPYCLAMFLSAHYAGEDLVLKLNPGEPWKKVFGPVFLYLNSVSSEDNAFSLWEDA KDQMLRETQNWPYSFPASEDFPKPDQRGKVCGRLEVQDRYVSYEPIPANGAYIGMAPLGDVGSWQRECKGYQFWTRADEDGNFTIDKIRTGEYNICAWVP GFIGDYKYDVVVNITEGCDISLGDLIYEPLRNGPTLWEIGIPDRTAAEFYIPDPDPKYINKLYVNHPDRYRQYGLWERYADLYPDGDLVFTVGISDYKND WFFAQVNRKREDGTYQGTTWQIKFLLRDVDHTGTYTLRLALATAHLAELQVRVNDPKSDPPLFTTGEIGHDNTIARHGIHGLYRLYNIDVAGVELVEGEN IIFLTQAMNT |
Full Sequence |
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Protein Sequence Length: 640 Download |
MSSPGVQLYI QDHYVLMDNG IIQVTISSPD GIVTGIQYNG IDNLLEVEDE EVHRGYWDLV 60 WSKTGSTGTT GTFDVFKGTS FKVVVETEDQ VEVSFTRTWD ISLEGDVVPL NLDKRFIMLR 120 NSPGFYSYAV FEHLEEWPPF NLPQVRIVFK LRKDKFHYMA VADNRQRFMP LPEDRLLDRG 180 QPLATPEAVL LVNPVEPEFK GEVDDKYQYS SENKDLKVHG WISLNPPVGF WQITPSSEFR 240 SGGPIKQNLT SHVGPYCLAM FLSAHYAGED LVLKLNPGEP WKKVFGPVFL YLNSVSSEDN 300 AFSLWEDAKD QMLRETQNWP YSFPASEDFP KPDQRGKVCG RLEVQDRYVS YEPIPANGAY 360 IGMAPLGDVG SWQRECKGYQ FWTRADEDGN FTIDKIRTGE YNICAWVPGF IGDYKYDVVV 420 NITEGCDISL GDLIYEPLRN GPTLWEIGIP DRTAAEFYIP DPDPKYINKL YVNHPDRYRQ 480 YGLWERYADL YPDGDLVFTV GISDYKNDWF FAQVNRKRED GTYQGTTWQI KFLLRDVDHT 540 GTYTLRLALA TAHLAELQVR VNDPKSDPPL FTTGEIGHDN TIARHGIHGL YRLYNIDVAG 600 VELVEGENII FLTQAMNTDP LQGIMYDYIR LECPPTTSS* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd10316 | RGL4_M | 6.0e-29 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 1.0e-43 | 445 | 632 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 3.0e-74 | 14 | 301 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 2.0e-95 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 639 | 1 | 649 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 632 | 1 | 612 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 1 | 639 | 1 | 636 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 638 | 1 | 637 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 639 | 1 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 350 | 1 | 347 | 0 |
DW479599 | 295 | 1 | 295 | 0 |
DW479600 | 296 | 1 | 296 | 0 |
DT552229 | 293 | 17 | 308 | 0 |
FC896579 | 279 | 74 | 349 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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