Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G227800.2 |
Family | PL4 |
Protein Properties | Length: 631 Molecular Weight: 72012.2 Isoelectric Point: 4.5739 |
Chromosome | Chromosome/Scaffold: 09 Start: 17863001 End: 17867654 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 609 | 0 |
KVLMDNGIIQVTISSPDGIVTGIQYNGIDNLLEVEDEEVHRGYWDLVWSKTGSTGTTGTFDVFKGTSFKVVVETEDQVEVSFTRTWDISLEGDVVPLNLD KRFIMLRNSPGFYSYAVFEHLEEWPPFNLPQVRIVFKLRKDKFHYMAVADNRQRFMPLPEDRLLDRGQPLATPEAVLLVNPVEPEFKGEVDDKYQYSSEN KDLKVHGWISLNPPVGFWQITPSSEFRSGGPIKQNLTSHVGPYCLAMFLSAHYAGEDLVLKLNPGEPWKKVFGPVFLYLNSVSSEDNAFSLWEDAKDQML RETQNWPYSFPASEDFPKPDQRGKVCGRLEVQDRYVSYEPIPANGAYIGMAPLGDVGSWQRECKGYQFWTRADEDGNFTIDKIRTGEYNICAWVPGFIGD YKYDVVVNITEGCDISLGDLIYEPLRNGPTLWEIGIPDRTAAEFYIPDPDPKYINKLYVNHPDRYRQYGLWERYADLYPDGDLVFTVGISDYKNDWFFAQ VNRKREDGTYQGTTWQIKFLLRDVDHTGTYTLRLALATAHLAELQVRVNDPKSDPPLFTTGEIGHDNTIARHGIHGLYRLYNIDVAGVELVEGENIIFLT QAMNT |
Full Sequence |
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Protein Sequence Length: 631 Download |
MVRIKVLMDN GIIQVTISSP DGIVTGIQYN GIDNLLEVED EEVHRGYWDL VWSKTGSTGT 60 TGTFDVFKGT SFKVVVETED QVEVSFTRTW DISLEGDVVP LNLDKRFIML RNSPGFYSYA 120 VFEHLEEWPP FNLPQVRIVF KLRKDKFHYM AVADNRQRFM PLPEDRLLDR GQPLATPEAV 180 LLVNPVEPEF KGEVDDKYQY SSENKDLKVH GWISLNPPVG FWQITPSSEF RSGGPIKQNL 240 TSHVGPYCLA MFLSAHYAGE DLVLKLNPGE PWKKVFGPVF LYLNSVSSED NAFSLWEDAK 300 DQMLRETQNW PYSFPASEDF PKPDQRGKVC GRLEVQDRYV SYEPIPANGA YIGMAPLGDV 360 GSWQRECKGY QFWTRADEDG NFTIDKIRTG EYNICAWVPG FIGDYKYDVV VNITEGCDIS 420 LGDLIYEPLR NGPTLWEIGI PDRTAAEFYI PDPDPKYINK LYVNHPDRYR QYGLWERYAD 480 LYPDGDLVFT VGISDYKNDW FFAQVNRKRE DGTYQGTTWQ IKFLLRDVDH TGTYTLRLAL 540 ATAHLAELQV RVNDPKSDPP LFTTGEIGHD NTIARHGIHG LYRLYNIDVA GVELVEGENI 600 IFLTQAMNTD PLQGIMYDYI RLECPPTTSS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 325 | 424 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-43 | 436 | 623 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-74 | 6 | 292 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 6.0e-94 | 6 | 194 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 8 | 630 | 1 | 620 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 8 | 623 | 1 | 612 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 6 | 630 | 15 | 636 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 6 | 629 | 15 | 637 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 6 | 630 | 15 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 336 | 6 | 338 | 0 |
DT552229 | 293 | 8 | 299 | 0 |
DW479599 | 281 | 6 | 286 | 0 |
DW479600 | 282 | 6 | 287 | 0 |
FC896579 | 279 | 65 | 340 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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