y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G309900.1 |
Family | PL1 |
Protein Properties | Length: 501 Molecular Weight: 54287.2 Isoelectric Point: 6.6664 |
Chromosome | Chromosome/Scaffold: 09 Start: 28597493 End: 28601501 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 129 | 335 | 0 |
VIQDEPLWIIFSTNMVIKLKHELIFNSFKTVDGRGVTVHVTGNGCITLQYVSHVIIHNIHVHHCKPSGNADIASSPTHVGWRGRSDGDGISIFSSQKIWI DHCALSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHDDRHLADSGMQVTIAFNHFGEALVQRMPRCRLGYIHVVNNDFTAWEMYAIGGSANPTINS QGNRYTA |
Full Sequence |
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Protein Sequence Length: 501 Download |
MLPFTCILLI CILGPFSSFG RAAFNLSLPH QHPHPESVVH DVQRRLNVSI SRRQALSVSQ 60 KDQCLTGNPI DDCWRCDPNW YNNRQRLADC SIGFGQGTLG GKGGRIYTVV DSSDNDVANP 120 KPGTLRHAVI QDEPLWIIFS TNMVIKLKHE LIFNSFKTVD GRGVTVHVTG NGCITLQYVS 180 HVIIHNIHVH HCKPSGNADI ASSPTHVGWR GRSDGDGISI FSSQKIWIDH CALSYCTDGL 240 IDAIMGSTGI TISNNYFSHH NEVMLLGHDD RHLADSGMQV TIAFNHFGEA LVQRMPRCRL 300 GYIHVVNNDF TAWEMYAIGG SANPTINSQG NRYTAPVDPN AKEVTKRVDT DEREWASWNW 360 RTEGDLMVNG AYFVPSGADV SPQYAKASSI QPKSAAFIQQ LTFTAGVFGE SSEETGSYTY 420 PGYTGNTVPS GTGTTTTGSA GPTDDGNFFG MIFGSGAAPS PTPPALTSMA STFLSLLIIL 480 ILCSITNQGA LPPLLSLLLL * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-19 | 216 | 331 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-54 | 153 | 333 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-61 | 142 | 336 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 6 | 482 | 18 | 508 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 418 | 115 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268818.1 | 0 | 1 | 464 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 2 | 410 | 3 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 461 | 1 | 464 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 68 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 68 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 87 | 333 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000003 | 158 | 353 | 135 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.00000000007 | 208 | 406 | 138 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |