Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G309900.2 |
Family | PL1 |
Protein Properties | Length: 359 Molecular Weight: 38504.3 Isoelectric Point: 6.3339 |
Chromosome | Chromosome/Scaffold: 09 Start: 28598038 End: 28601493 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 2 | 193 | 0 |
VIKLKHELIFNSFKTVDGRGVTVHVTGNGCITLQYVSHVIIHNIHVHHCKPSGNADIASSPTHVGWRGRSDGDGISIFSSQKIWIDHCALSYCTDGLIDA IMGSTGITISNNYFSHHNEVMLLGHDDRHLADSGMQVTIAFNHFGEALVQRMPRCRLGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTA |
Full Sequence |
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Protein Sequence Length: 359 Download |
MVIKLKHELI FNSFKTVDGR GVTVHVTGNG CITLQYVSHV IIHNIHVHHC KPSGNADIAS 60 SPTHVGWRGR SDGDGISIFS SQKIWIDHCA LSYCTDGLID AIMGSTGITI SNNYFSHHNE 120 VMLLGHDDRH LADSGMQVTI AFNHFGEALV QRMPRCRLGY IHVVNNDFTA WEMYAIGGSA 180 NPTINSQGNR YTAPVDPNAK EVTKRVDTDE REWASWNWRT EGDLMVNGAY FVPSGADVSP 240 QYAKASSIQP KSAAFIQQLT FTAGVFGESS EETGSYTYPG YTGNTVPSGT GTTTTGSAGP 300 TDDGNFFGMI FGSGAAPSPT PPALTSMAST FLSLLIILIL CSITNQGALP PLLSLLLL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-19 | 74 | 189 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-53 | 11 | 191 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-60 | 1 | 194 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL24172.1 | 0 | 1 | 340 | 1 | 339 | putative pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_196051.2 | 0 | 1 | 340 | 170 | 508 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 1 | 322 | 147 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 268 | 146 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 319 | 147 | 464 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 265 | 76 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 265 | 76 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000001 | 1 | 191 | 56 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000002 | 19 | 204 | 138 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000004 | 74 | 168 | 205 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC916488 | 294 | 20 | 312 | 0 |
DY275830 | 294 | 20 | 312 | 0 |
FC882705 | 264 | 50 | 312 | 0 |
DY271661 | 264 | 50 | 312 | 0 |
JG184875 | 248 | 24 | 270 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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