Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G334500.1 |
Family | PL1 |
Protein Properties | Length: 437 Molecular Weight: 48417.9 Isoelectric Point: 7.4533 |
Chromosome | Chromosome/Scaffold: 09 Start: 35402479 End: 35404034 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 354 | 0 |
ITFKRSMTIKLQQELIVTTDKTIDARGANVEICNGAGITIQFAKNVIIHGLQIHHIIPAKGGKIKDGENHHGLRGDSDGDGVSLFGATNVWLDHLSLYHC ADGLIDVVQGSTAVTVSNCHFTDHNDVLLFGASDSYSADKKMQVTVALNHFGKGLVERRPRCGFGFIHVVNNDYNHWFLYAIGGTSNPTIISQGNRYL |
Full Sequence |
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Protein Sequence Length: 437 Download |
MGISSYRYSF FLFLFVVIIP TLKAHITEYD EYWKARELEA IENLDQAYHS NPEEVVRHYN 60 DHFSRTMLEF YITKKVLAES KKGACEVTNH VDSCWRCDPD WEKNRKKLAD CAPGFARGTT 120 GGKDGQFYVV TDPIDNAVDP KPGTLRHGVT QTGPLYITFK RSMTIKLQQE LIVTTDKTID 180 ARGANVEICN GAGITIQFAK NVIIHGLQIH HIIPAKGGKI KDGENHHGLR GDSDGDGVSL 240 FGATNVWLDH LSLYHCADGL IDVVQGSTAV TVSNCHFTDH NDVLLFGASD SYSADKKMQV 300 TVALNHFGKG LVERRPRCGF GFIHVVNNDY NHWFLYAIGG TSNPTIISQG NRYLAPGFGA 360 KEVTCRGLLK PAQWKNWNWV SQGDHFENGA FFTPSGNPSA SKQFGADKMM PFKPGQMVPE 420 LTKYAGPLSC LIGHPC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam04431 | Pec_lyase_N | 4.0e-11 | 25 | 67 | 43 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
COG3866 | PelB | 3.0e-28 | 118 | 351 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 2.0e-61 | 168 | 353 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 1.0e-67 | 163 | 357 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 17 | 436 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 17 | 436 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 16 | 436 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 14 | 436 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 8 | 436 | 9 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 429 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 429 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-17 | 108 | 360 | 2 | 251 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000000007 | 118 | 353 | 17 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.0000000000007 | 153 | 353 | 109 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |