Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G334600.1 |
Family | PL1 |
Protein Properties | Length: 346 Molecular Weight: 38262.3 Isoelectric Point: 7.7123 |
Chromosome | Chromosome/Scaffold: 09 Start: 35406210 End: 35407411 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 84 | 264 | 7.9e-38 |
TQTGPLWITFKGDKTIDARGANVEICNGAGITIQFAKNIIIHGLQIHHIIPTKGGKIKNGENHHGLRGDSDGDWVSLFGATNIWLDHLSLHHCVDGLIDV VQGSTAVTVSNYHFTDHNDCRQEDAGHCCFEHFGKGLVERMPRCRFGFIHVVNNDYNHWFLYAIGETSNPTIISQGNRYSA |
Full Sequence |
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Protein Sequence Length: 346 Download |
MLEFYITKRV LAESKKGPCK VTNHVDSCWR CDPDWEKNRK KLADCALGFA QGTTGRKDGE 60 FYVVADPIDN AADPKPGTLR HAVTQTGPLW ITFKGDKTID ARGANVEICN GAGITIQFAK 120 NIIIHGLQIH HIIPTKGGKI KNGENHHGLR GDSDGDWVSL FGATNIWLDH LSLHHCVDGL 180 IDVVQGSTAV TVSNYHFTDH NDCRQEDAGH CCFEHFGKGL VERMPRCRFG FIHVVNNDYN 240 HWFLYAIGET SNPTIISQGN RYSAPGFGAK EVTYRGLLKP GQWKNWNWVS EGDHFENGAF 300 FTPSGNPSAS KQFGGDKMMP FKPGQMVPEL TKYARPLSCT IGCPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-19 | 77 | 260 | 212 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-39 | 93 | 262 | 189 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-43 | 91 | 266 | 197 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 7 | 345 | 74 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 7 | 345 | 103 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 7 | 345 | 75 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282500.1 | 0 | 7 | 345 | 6 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002520133.1 | 0 | 7 | 345 | 75 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 23 | 334 | 2 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 23 | 334 | 2 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000002 | 91 | 269 | 64 | 251 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000004 | 79 | 263 | 116 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3krg_A | 0.00000002 | 80 | 272 | 112 | 335 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO115086 | 219 | 139 | 346 | 0 |
CO119488 | 219 | 139 | 346 | 0 |
CO119489 | 216 | 1 | 202 | 0 |
CO115213 | 278 | 25 | 276 | 0 |
CO100993 | 273 | 20 | 267 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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