| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.009G335100.1 |
| Family | PL1 |
| Protein Properties | Length: 291 Molecular Weight: 32027.4 Isoelectric Point: 7.4772 |
| Chromosome | Chromosome/Scaffold: 09 Start: 35438782 End: 35439820 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 33 | 197 | 4.1e-29 |
| LWITFKGSKTIELEHEHIVTSDKTIDAGGANVEICNGAGITVQFRKTIICHGLQIHHIMLAKGGKIKDGENHLGLQSANNSDRVSILGTTNIWLDYLSLH HCAYGFIDVIQGSTVVIISNCHFGYHDNVMLFGASDSYNANEKMQVTLALNHFGKGLVDRMPSND | |||
| Full Sequence |
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| Protein Sequence Length: 291 Download |
| MGGEFYVVTD PIDNAADPKS GTLHHVLTKT RPLWITFKGS KTIELEHEHI VTSDKTIDAG 60 GANVEICNGA GITVQFRKTI ICHGLQIHHI MLAKGGKIKD GENHLGLQSA NNSDRVSILG 120 TTNIWLDYLS LHHCAYGFID VIQGSTVVII SNCHFGYHDN VMLFGASDSY NANEKMQVTL 180 ALNHFGKGLV DRMPSNDYND RFLYAIGGTN HPTLIIQHNR GLLKLAQWKN WNWVSQGDDF 240 KNSAFFTPSS NPSASKQFGA DKMMPFKPGQ MVPELTKYVG PVSYTIGHPC * 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-11 | 51 | 219 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-31 | 30 | 220 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-32 | 50 | 220 | 190 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79927.1 | 0 | 3 | 290 | 126 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 3 | 290 | 155 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002270089.1 | 0 | 3 | 290 | 126 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282500.1 | 0 | 3 | 290 | 58 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002520133.1 | 0 | 3 | 290 | 128 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 283 | 37 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 283 | 37 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00001 | 35 | 194 | 50 | 199 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.0004 | 51 | 194 | 78 | 232 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.006 | 114 | 194 | 190 | 287 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CO115086 | 219 | 97 | 291 | 0 |
| CO119488 | 219 | 97 | 291 | 0 |
| CO113727 | 289 | 26 | 289 | 0 |
| CO115900 | 274 | 31 | 279 | 0 |
| CO115213 | 228 | 3 | 220 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Gossypium raimondii | Gorai.009G335000.1 | Gorai.009G334900.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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