y
Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.009G336100.1 |
Family | GH28 |
Protein Properties | Length: 458 Molecular Weight: 49675.8 Isoelectric Point: 8.9217 |
Chromosome | Chromosome/Scaffold: 09 Start: 36266342 End: 36268745 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 97 | 420 | 0 |
KAACKISGATVEIPSGFKFLIKPITLQGPCMPNLVLQINGALLAPPKVGSWPKSSLFQWINFKWIHNFTIQGSGVVDGQGSQWWTPSNQIYLIQALRFYS SFNVTVRDIKIINSPQCHLKFDSSGGIQVDNITISSPETSPNTDGIHLQNTRDVEIQHSNIGCGDDCVSIQTGCSNVHIHHINCGPGHGISLGGLGKDKS VACVSNIVVEKVSVFNTLAGVRIKTWQGGMGSVKNVSFSNIQVSDVKVPIIIDQYYCDKDICKNQTMAVAISGVKYDQIVGTYTSRPVHLACSNGIPCTD VDLTDIQLKPSFKYRGLDEAMCWN |
Full Sequence |
---|
Protein Sequence Length: 458 Download |
MKLHRSLCLV ALMFLVIITS SITSVEGRKH HHHKHKKDKK KNNSDNCTVP GSSPASPPTI 60 PGHASYPTGS KTFDVLSFGA KGNGVSDDSK AFLTAWKAAC KISGATVEIP SGFKFLIKPI 120 TLQGPCMPNL VLQINGALLA PPKVGSWPKS SLFQWINFKW IHNFTIQGSG VVDGQGSQWW 180 TPSNQIYLIQ ALRFYSSFNV TVRDIKIINS PQCHLKFDSS GGIQVDNITI SSPETSPNTD 240 GIHLQNTRDV EIQHSNIGCG DDCVSIQTGC SNVHIHHINC GPGHGISLGG LGKDKSVACV 300 SNIVVEKVSV FNTLAGVRIK TWQGGMGSVK NVSFSNIQVS DVKVPIIIDQ YYCDKDICKN 360 QTMAVAISGV KYDQIVGTYT SRPVHLACSN GIPCTDVDLT DIQLKPSFKY RGLDEAMCWN 420 SYGKSQGPLY PSSIDSCVRR DGGSVKRIAR SREHVCF* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-64 | 68 | 425 | 365 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-64 | 102 | 404 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 8.0e-67 | 71 | 425 | 362 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-72 | 72 | 431 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-87 | 64 | 451 | 398 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 26 | 456 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 26 | 456 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 28 | 456 | 31 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 73 | 445 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 7 | 456 | 10 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 163 | 356 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 4e-21 | 64 | 424 | 12 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 3e-18 | 172 | 391 | 80 | 307 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-18 | 172 | 391 | 80 | 307 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-18 | 172 | 391 | 80 | 307 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |