Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.009G339700.1 |
Family | PL1 |
Protein Properties | Length: 512 Molecular Weight: 56794 Isoelectric Point: 9.1143 |
Chromosome | Chromosome/Scaffold: 09 Start: 38916579 End: 38924625 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 224 | 430 | 0 |
VIQDRPVWIVFKRDMVIKLKQELIMNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRNSPSHFGWRTMADGDAISIFGSSHIWV DHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINS QGNRYAA |
Full Sequence |
---|
Protein Sequence Length: 512 Download |
MMDREKDVTL HRRSRRFYPL ISLLALLFSS KFLDSKKAIS LEVLLLTLPA PLSHIFLLLS 60 VVCLDKREKP GGKLLSAEEA SKVAMAVPMQ WAFSSLALLF LFLVGGSIAT NTTSRLEDID 120 PLNEHAVADP EAVAMEVETI IDLNIRNLTE RRKLGFFSCG TGNPIDDCWR CDPNWHKRRK 180 RLAECGIGFG RNAVGGRDGR FYIVTDHTDD DPVNPKPGTL RHAVIQDRPV WIVFKRDMVI 240 KLKQELIMNS FKTIDGRGAN VHIANGGCIT IQFVTNVIIH GLHIHDCKPT GNAMVRNSPS 300 HFGWRTMADG DAISIFGSSH IWVDHNSLSN CADGLVDAVM GSTAITISNN HFTHHNEVML 360 LGHSDSYTRD KQMQVTIAYN HFGKGLIQRM PRCRHGYFHV VNNDYTHWEM YAIGGSGNPT 420 INSQGNRYAA PMNPFAKEVT KRVETAESKW KNWNWRSEGD LLVNGAYFTP SGAGASASYA 480 RASSLGAKSS SMVRAMTLNA GSLPCRRGRQ C* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 0.006 | 253 | 386 | 143 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
COG3866 | PelB | 2.0e-30 | 250 | 426 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-74 | 243 | 428 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-83 | 237 | 431 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 144 | 511 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ACB12931.1 | 0 | 117 | 511 | 61 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
RefSeq | NP_567409.1 | 0 | 109 | 511 | 67 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002297822.1 | 0 | 85 | 511 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 117 | 511 | 61 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 163 | 501 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 163 | 501 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-18 | 232 | 428 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 5e-16 | 246 | 405 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000007 | 241 | 502 | 78 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |