y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G439300.1 |
Family | PL1 |
Protein Properties | Length: 455 Molecular Weight: 52013.8 Isoelectric Point: 9.9212 |
Chromosome | Chromosome/Scaffold: 09 Start: 68999656 End: 69002042 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 371 | 0 |
QKRPLWIIFAHDMNIKLSQELMVQSHKTIDGRGANVHIAYGCGITLQFVHNVIIHNIHIHRVVRSSGGLIRDSEDHYGFRTVGDGDGISIFGSSKIWLDH ISMSECQDGLIDAIQGSTAITISNCHFTHHDHVILLGASDTYSKDQFMQVTLAFNHFGKELIQRMPRCRWGYFHVVNNDYTHWKLYAIGGSTHPTIISQG NRFIA |
Full Sequence |
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Protein Sequence Length: 455 Download |
MEVTKLRVVF LFSFFTLIPK LWANIAEFDD FWKQREEEAW KIALAAYEPS PENVTCHLNY 60 HVNKVLEKPM SNQVLEFKDV ITNSTRRYLR GKHKKYTGPC MAVNPIDRCW RCKKNWAKNR 120 KRLAKCVLGF GHKTRGGSKG GYYLVNDNSD DDVVNPKPGT LRHAVIQKRP LWIIFAHDMN 180 IKLSQELMVQ SHKTIDGRGA NVHIAYGCGI TLQFVHNVII HNIHIHRVVR SSGGLIRDSE 240 DHYGFRTVGD GDGISIFGSS KIWLDHISMS ECQDGLIDAI QGSTAITISN CHFTHHDHVI 300 LLGASDTYSK DQFMQVTLAF NHFGKELIQR MPRCRWGYFH VVNNDYTHWK LYAIGGSTHP 360 TIISQGNRFI APDDPLTKQI TNRNYASESE WRHWVWRSEG DRFMNGAFFV TSGPPSPPRL 420 KFKKKDIIKP KPAIFVGRLT KFSGTLKCKE GVKC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-17 | 24 | 89 | 66 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 6.0e-21 | 262 | 369 | 119 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-53 | 185 | 369 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-60 | 178 | 373 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 17 | 454 | 20 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 17 | 454 | 49 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 454 | 1 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 10 | 454 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 454 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 104 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 104 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 185 | 360 | 62 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 5e-16 | 187 | 369 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000000003 | 182 | 369 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |