Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G450300.1 |
Family | PL1 |
Protein Properties | Length: 393 Molecular Weight: 44055.4 Isoelectric Point: 6.2213 |
Chromosome | Chromosome/Scaffold: 09 Start: 70122570 End: 70124480 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 109 | 313 | 0 |
AVIQTEPLWIIFDHDMVINLREQLLINSYKTIDGRGHDVQITSGPCITLHNVSNVIIHNIYIHKCSPSGNAMVWDPFPHSGSDGDGISIFGSRDVWIDHC TLANCYDGLIDATYGSTSITISNNYMLHHNEVMLMGHSDEFLDDKNMQVTIAFNYFGEGLVQRMPRCRHGYFHIVNNVYTGWQMYAIGGSANPTINSQGN VFVAS |
Full Sequence |
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Protein Sequence Length: 393 Download |
MARFYLVSLL ICLHATSTFS RHVPQQISEP VPRYSTRRQL DTEQCRTGNP IDDCWRCDPE 60 WEANRKKLAD CAVGFGKNAI GGRDGDVYVV TDSGNDDPLN PTPGTLRHAV IQTEPLWIIF 120 DHDMVINLRE QLLINSYKTI DGRGHDVQIT SGPCITLHNV SNVIIHNIYI HKCSPSGNAM 180 VWDPFPHSGS DGDGISIFGS RDVWIDHCTL ANCYDGLIDA TYGSTSITIS NNYMLHHNEV 240 MLMGHSDEFL DDKNMQVTIA FNYFGEGLVQ RMPRCRHGYF HIVNNVYTGW QMYAIGGSAN 300 PTINSQGNVF VASDNNYSKE VTKRESYFDE WKNWNWRSEG DMMLNGAFFT PSGQEASESY 360 IKASSMVARP SSLLTQTAQY AGTLRCRKGY GC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 131 | 310 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-55 | 130 | 310 | 211 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-70 | 123 | 314 | 203 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32549.1 | 0 | 23 | 392 | 39 | 413 | pectase lyase [Prunus persica] |
EMBL | CBI39737.1 | 0 | 68 | 392 | 2 | 332 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265729.1 | 0 | 1 | 392 | 1 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317359.1 | 0 | 33 | 392 | 2 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522747.1 | 0 | 1 | 392 | 1 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 49 | 384 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 49 | 384 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 118 | 312 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 5e-17 | 129 | 310 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 4e-16 | 129 | 353 | 80 | 325 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |