Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G033000.1 |
Family | PL4 |
Protein Properties | Length: 642 Molecular Weight: 73326.4 Isoelectric Point: 5.1437 |
Chromosome | Chromosome/Scaffold: 10 Start: 2962091 End: 2967441 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 7 | 624 | 0 |
QLFIQDDHVVMDNGILQVTISKPEGIVTGVSYQGIDNLLEIRNHESDRGYWDLVWSEEGTGGTTGTSYVIKGSKFEVTVENEEQLEISFTRDWSTSLEGK HVPLNIDKRFVMLRGSSGFYSYAIYEHLKEWPGFNLPQTRVVFKLRKDKFRYMAVADNRQRRMPLPDDRSPRRSSPLAYPEAVLIVHPVESEFKGEVDDK YQYSCENKDLHVHGWICNDPPVGWWQITPSNEFRSGGPMKQNLTSHVGPINLAVSNKQMFLSAHYVGEEMVPKFQRGEPWKKVFGPVFVYLNTLIDNNDP LWLWEDAKQETNTQVQCWPYNFLASDDFPKSEQRGCVSGRLRVSDRYVSNEHISVNGAYVGLAPPGDVGSWQTESKGYQFWTKTDENGYFLINDIRAGDY NLYAWVPGFIGDYKNDTIITITSGCDIDMGELVYEPPRDGATLWEIGIPDRTAAEFYVPDPDPKYINKLYVNHPEKYRQYGLWERYSDLYPNGDLVYTVG VSDYRTDWFFAQVTRKKDDGKYEGTTWQIKFNLDHINQTGTYKLRVALATAYVAELQVRINNPKANPPLFTTGVIGHDNTITRHGIHGLYGLYSIDLKGT LLMEGENTIFLTQPMCSS |
Full Sequence |
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Protein Sequence Length: 642 Download |
MSIQGVQLFI QDDHVVMDNG ILQVTISKPE GIVTGVSYQG IDNLLEIRNH ESDRGYWDLV 60 WSEEGTGGTT GTSYVIKGSK FEVTVENEEQ LEISFTRDWS TSLEGKHVPL NIDKRFVMLR 120 GSSGFYSYAI YEHLKEWPGF NLPQTRVVFK LRKDKFRYMA VADNRQRRMP LPDDRSPRRS 180 SPLAYPEAVL IVHPVESEFK GEVDDKYQYS CENKDLHVHG WICNDPPVGW WQITPSNEFR 240 SGGPMKQNLT SHVGPINLAV SNKQMFLSAH YVGEEMVPKF QRGEPWKKVF GPVFVYLNTL 300 IDNNDPLWLW EDAKQETNTQ VQCWPYNFLA SDDFPKSEQR GCVSGRLRVS DRYVSNEHIS 360 VNGAYVGLAP PGDVGSWQTE SKGYQFWTKT DENGYFLIND IRAGDYNLYA WVPGFIGDYK 420 NDTIITITSG CDIDMGELVY EPPRDGATLW EIGIPDRTAA EFYVPDPDPK YINKLYVNHP 480 EKYRQYGLWE RYSDLYPNGD LVYTVGVSDY RTDWFFAQVT RKKDDGKYEG TTWQIKFNLD 540 HINQTGTYKL RVALATAYVA ELQVRINNPK ANPPLFTTGV IGHDNTITRH GIHGLYGLYS 600 IDLKGTLLME GENTIFLTQP MCSSALQGLM YDYIRLEAPP S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.006 | 378 | 415 | 38 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 1.0e-33 | 339 | 438 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-51 | 450 | 637 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-67 | 11 | 299 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 7.0e-95 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 641 | 1 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 641 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 1 | 640 | 1 | 632 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 641 | 1 | 635 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 641 | 1 | 636 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 355 | 1 | 352 | 0 |
DW479599 | 300 | 1 | 300 | 0 |
DW479600 | 302 | 1 | 302 | 0 |
DT552229 | 298 | 17 | 313 | 0 |
FC896579 | 283 | 75 | 354 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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