Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G090400.1 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 53313.6 Isoelectric Point: 6.9545 |
Chromosome | Chromosome/Scaffold: 10 Start: 13885403 End: 13889201 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 443 | 0 |
RGGGQLNVPPGKWLTAPFNLTSHMTLFLAEDAEILGIQDEKRWPLMPPLPSYGYGREHRGPRYGSLIHGQNLEDVVITGHNGSINGQGQSWWIKYRQKLL NHTRGPLVQIMWSNDIVISNITLRDSPFWTFHPYDCKNVTVRNVTILAPVFGAPNTDGIDPDSCEDVVIEDCYISVGDDAIAIKSGWDQYGIVYGRPSRN ILIRNLIVRSMVSAGVSIGSEMSGGVSNVTVENVTVWSSRRAVRIKTAVGRGGYVRHITYRNLTFDDAQVGIVIKTDYNEHPDMDFDKNAFPILENISFT GIHGQGVRVPVRIHGSEEIPVRNVTFRDMNVGITYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 483 Download |
MAESLPVGGF PAFLSSHKTL FIVLWISAFG SVFLWQRDIV GAGFSVFGKA GPGRSMSGSR 60 PFEFNITDFG GVGDGVTDDT AAFERAISAI SKLGKRGGGQ LNVPPGKWLT APFNLTSHMT 120 LFLAEDAEIL GIQDEKRWPL MPPLPSYGYG REHRGPRYGS LIHGQNLEDV VITGHNGSIN 180 GQGQSWWIKY RQKLLNHTRG PLVQIMWSND IVISNITLRD SPFWTFHPYD CKNVTVRNVT 240 ILAPVFGAPN TDGIDPDSCE DVVIEDCYIS VGDDAIAIKS GWDQYGIVYG RPSRNILIRN 300 LIVRSMVSAG VSIGSEMSGG VSNVTVENVT VWSSRRAVRI KTAVGRGGYV RHITYRNLTF 360 DDAQVGIVIK TDYNEHPDMD FDKNAFPILE NISFTGIHGQ GVRVPVRIHG SEEIPVRNVT 420 FRDMNVGITY KKKHIFQCAF VQGRVIGTIF PAPCENLDIY DEEERPVKLS TAQNVTDIDY 480 RV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-21 | 142 | 454 | 324 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 5.0e-23 | 176 | 443 | 273 | + polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-29 | 166 | 426 | 268 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-36 | 162 | 433 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-58 | 81 | 418 | 376 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 11 | 480 | 24 | 507 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 11 | 480 | 24 | 491 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 11 | 480 | 25 | 493 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 10 | 480 | 24 | 493 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 11 | 480 | 23 | 492 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 63 | 423 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 63 | 423 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 63 | 423 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 63 | 423 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000003 | 108 | 376 | 52 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |