| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G090400.2 |
| Family | GH28 |
| Protein Properties | Length: 399 Molecular Weight: 44754 Isoelectric Point: 6.7297 |
| Chromosome | Chromosome/Scaffold: 10 Start: 13885431 End: 13889171 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 71 | 359 | 0 |
| GPRYGSLIHGQNLEDVVITGHNGSINGQGQSWWIKYRQKLLNHTRGPLVQIMWSNDIVISNITLRDSPFWTFHPYDCKNVTVRNVTILAPVFGAPNTDGI DPDSCEDVVIEDCYISVGDDAIAIKSGWDQYGIVYGRPSRNILIRNLIVRSMVSAGVSIGSEMSGGVSNVTVENVTVWSSRRAVRIKTAVGRGGYVRHIT YRNLTFDDAQVGIVIKTDYNEHPDMDFDKNAFPILENISFTGIHGQGVRVPVRIHGSEEIPVRNVTFRDMNVGITYKKKHIFQCAFVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| MTIFSDNFDP FHANMTVFLI SLCYPAVVFK TLDFGGFNLV VCCFPAIIQD EKRWPLMPPL 60 PSYGYGREHR GPRYGSLIHG QNLEDVVITG HNGSINGQGQ SWWIKYRQKL LNHTRGPLVQ 120 IMWSNDIVIS NITLRDSPFW TFHPYDCKNV TVRNVTILAP VFGAPNTDGI DPDSCEDVVI 180 EDCYISVGDD AIAIKSGWDQ YGIVYGRPSR NILIRNLIVR SMVSAGVSIG SEMSGGVSNV 240 TVENVTVWSS RRAVRIKTAV GRGGYVRHIT YRNLTFDDAQ VGIVIKTDYN EHPDMDFDKN 300 AFPILENISF TGIHGQGVRV PVRIHGSEEI PVRNVTFRDM NVGITYKKKH IFQCAFVQGR 360 VIGTIFPAPC ENLDIYDEEE RPVKLSTAQN VTDIDYRV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-21 | 58 | 370 | 324 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 4.0e-23 | 92 | 359 | 273 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-29 | 82 | 342 | 268 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-35 | 78 | 349 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-45 | 76 | 334 | 282 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 48 | 396 | 143 | 507 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 48 | 396 | 143 | 491 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 48 | 396 | 145 | 493 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 48 | 396 | 145 | 493 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 48 | 396 | 144 | 492 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-33 | 74 | 339 | 113 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-33 | 74 | 339 | 113 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-33 | 74 | 339 | 113 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-33 | 74 | 339 | 113 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000003 | 93 | 292 | 117 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES803406 | 321 | 49 | 368 | 0 |
| FN769574 | 320 | 54 | 373 | 0 |
| HO778855 | 307 | 48 | 354 | 0 |
| JK989090 | 294 | 103 | 396 | 0 |
| ES803406 | 49 | 337 | 384 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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