Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G162800.6 |
Family | CBM57 |
Protein Properties | Length: 1005 Molecular Weight: 112526 Isoelectric Point: 6.5929 |
Chromosome | Chromosome/Scaffold: 10 Start: 46906796 End: 46917849 |
Description | receptor-like kinase in flowers 1 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 402 | 589 | 7.3e-23 |
LHVNCGGKGTRIKEHKTNILYEGDGDVEGGAAKYYIKEDTYWGFSSTGDFMDDNDFQNTRYTVSKPLSNISELYTTARRAPISLTYFHYCLENGNYTITF NFAELQFTPDEAYNSLGRRIFDIYVQEKLVWKDFNIESEAKGSLKPLVKQISNVSVTTNFLAIRFFWDGKGTTRIPQRSAYGPLVSAI |
Full Sequence |
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Protein Sequence Length: 1005 Download |
MLIQLRCFCS FLHSYILLRC LWNYECLLVD ALEEITTAMG STYWKFIGDS CEIEMVGVTL 60 VPPKNSEHEI SCECEADGTV CHVVRIAIKG YNLPGILPPQ LVKLPYLREI DFAYNYLNGT 120 IPIEWASMKL TSISLLVNRL SGEIPKYLGN ITTLTYLSLE ANQFSGPVPP ELGNLVNLTT 180 LMLSSNQLTG NLPVTFSLLK NLTDLRINDN NFNGTIPGFI LNWEQLSRLE MHASGLTGPI 240 PVSLSPLRNL LVLRISDISG PSQDFPVLRD MKGLVTLVLR SCNISGEIPD YIWAMKNLEM 300 LDLSFNKLVG KIPTRISSDR LRFVFLSGNM LSGDVPDSIL KQGSSIDLSY NNFEWQGPEK 360 PVCQENMNLN LNLFCSSSSR NNLRGALPCK KDFTCPQYSN CLHVNCGGKG TRIKEHKTNI 420 LYEGDGDVEG GAAKYYIKED TYWGFSSTGD FMDDNDFQNT RYTVSKPLSN ISELYTTARR 480 APISLTYFHY CLENGNYTIT FNFAELQFTP DEAYNSLGRR IFDIYVQEKL VWKDFNIESE 540 AKGSLKPLVK QISNVSVTTN FLAIRFFWDG KGTTRIPQRS AYGPLVSAIS VISDSKPCSK 600 RKNNGSSYAI VVGVLGSCLV LFTLGILWWK GHLLVKYWRK EDTKEDSSSG NFTLKQIKVA 660 TDDFDPANKI GEGGFGPVYK GQLSDGTRIA VKQLSSKSRQ GNREFLNEIG MISCLQHPNL 720 VKLHGFCVEG DQLLLVYEYM ENNSLARALF GSENNQLELD WPTRLRICIG IAKGLAFLHE 780 ESRLKIVHRD IKATNVLLDS DLNPKISDFG LARLDEEEKT HITTRVAGTI GYMAPEYALW 840 GHLTHKADVY SFGVLTTELV SGKNTNNFMP SKKFVCLLDW ACHLLQSGNF IALLDERLRS 900 EVKKEEVQLM VKVALLCTNA SASLRPTMSE VVNMLEGRTS VPDPIPEPSS FTEDLRFKAM 960 RDLQQQKEDH SRSQTQNSTS VHSFYSSSTS NSSNEIKPDS GFCQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07714 | Pkinase_Tyr | 3.0e-50 | 669 | 935 | 279 | + Protein tyrosine kinase. | ||
smart00221 | STYKc | 1.0e-51 | 669 | 935 | 276 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
cd00192 | PTKc | 7.0e-52 | 668 | 936 | 290 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. | ||
smart00219 | TyrKc | 5.0e-52 | 669 | 935 | 274 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
pfam11721 | Malectin | 6.0e-53 | 401 | 589 | 190 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0004672 | protein kinase activity |
GO:0005515 | protein binding |
GO:0005524 | ATP binding |
GO:0006468 | protein phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_174268.7 | 0 | 29 | 974 | 47 | 991 | RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase [Arabidopsis thaliana] |
RefSeq | NP_850955.5 | 0 | 26 | 974 | 29 | 976 | RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase [Arabidopsis thaliana] |
RefSeq | XP_002264679.1 | 0 | 29 | 1003 | 6 | 1008 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305711.1 | 0 | 29 | 996 | 1 | 936 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522277.1 | 0 | 39 | 1000 | 1 | 917 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ulz_A | 0 | 651 | 937 | 19 | 308 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3uim_A | 0 | 651 | 937 | 19 | 308 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
PDB | 3tl8_H | 0 | 651 | 937 | 27 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_G | 0 | 651 | 937 | 27 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_D | 0 | 651 | 937 | 27 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |