Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G182700.1 |
Family | PL1 |
Protein Properties | Length: 394 Molecular Weight: 43032.9 Isoelectric Point: 5.5438 |
Chromosome | Chromosome/Scaffold: 10 Start: 53236207 End: 53237538 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 112 | 312 | 0 |
LWIIFATDMVITLKNELIVNSFKTIDGRGANVEIAYGPCITIHGVTDVIIHGISIHDCKPGVAGLVRSSPTYVGKRGGSDGDAVSVFSSSNIWIDHCYLA RSEDGLIDVIHASTDVTISNNYFAQHDKVMLLGHSDDFAADEVMKVTLVFNRFGEGLIERMPRVRIGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFI A |
Full Sequence |
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Protein Sequence Length: 394 Download |
MASLTLISLP LLSLLFLNFA YPSQLPNNAS ASLLYNVSTI STVKFMNVID SCWRTINWAT 60 NREALADCSV GFGKASIGGK YGPIYLVTTP YDDPVNPTPG TLRFGAIQSS PLWIIFATDM 120 VITLKNELIV NSFKTIDGRG ANVEIAYGPC ITIHGVTDVI IHGISIHDCK PGVAGLVRSS 180 PTYVGKRGGS DGDAVSVFSS SNIWIDHCYL ARSEDGLIDV IHASTDVTIS NNYFAQHDKV 240 MLLGHSDDFA ADEVMKVTLV FNRFGEGLIE RMPRVRIGYA HVANNRYDEW KMYAIGGSAN 300 PTIFSEGNYF IAPDDPGSKE VTKRETNNWE TWRWQSSKDV FINGAYFVPS GHGSSDPLYT 360 MTQSFIVAPG YMVPDLTADA GPLHCLLDRP CML* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-28 | 125 | 351 | 239 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-64 | 125 | 310 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-75 | 119 | 314 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 46 | 391 | 50 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 2 | 391 | 5 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 391 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 391 | 13 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 44 | 391 | 41 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 47 | 381 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 47 | 381 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-19 | 64 | 312 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000007 | 128 | 310 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000002 | 125 | 310 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |