| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G196700.1 |
| Family | PL1 |
| Protein Properties | Length: 337 Molecular Weight: 37566.5 Isoelectric Point: 10.2055 |
| Chromosome | Chromosome/Scaffold: 10 Start: 55739307 End: 55740456 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 100 | 290 | 0 |
| WITFKNSMTITLQRPLLLSSFTTIDGRGVDVHITGAGCLLVYQATDIIIHGLRIHHCKAQPPSTVMGPNAKVIPLGQMDGDAIRLVTARKVWIDHNTLYE CQDGLLDVTRGSTNITVSNNWFRNQDKVMLLGHDDGHLRDKNIKVTVIFNHFGPNCNQRMPRVRHGYAHVANNFYQGWEQYAIGGSMSPSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 337 Download |
| MATTLSCCFT LAVFMAILMA SPSLSLANMN VIDKCWRGNP LWRSQRQQLA KCSVGFAGKM 60 INNIGKDVVK YKVTDPSDDP LSPKSGTLRY GTTMIKGKVW ITFKNSMTIT LQRPLLLSSF 120 TTIDGRGVDV HITGAGCLLV YQATDIIIHG LRIHHCKAQP PSTVMGPNAK VIPLGQMDGD 180 AIRLVTARKV WIDHNTLYEC QDGLLDVTRG STNITVSNNW FRNQDKVMLL GHDDGHLRDK 240 NIKVTVIFNH FGPNCNQRMP RVRHGYAHVA NNFYQGWEQY AIGGSMSPSI KKVTWRKGEK 300 GLWKFYSVRD VFKNGASFSK QTCVGGAKPN YNPDKIL |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 85 | 291 | 223 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-54 | 119 | 290 | 180 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-63 | 107 | 290 | 195 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 60 | 332 | 1 | 289 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 25 | 332 | 15 | 338 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 29 | 337 | 1 | 328 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 335 | 1 | 324 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 9 | 291 | 6 | 291 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 318 | 2 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 318 | 2 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 93 | 288 | 42 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-16 | 115 | 275 | 128 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.0000000000005 | 122 | 282 | 82 | 231 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
