| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G196800.1 |
| Family | PL1 |
| Protein Properties | Length: 378 Molecular Weight: 41959.3 Isoelectric Point: 9.2365 |
| Chromosome | Chromosome/Scaffold: 10 Start: 55753348 End: 55758423 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 99 | 300 | 0 |
| VCITFKNSMTITLQRPLLLSSFTAIDGRGVDVHITGAGCLLVYQATDIIIHGLRIHHCKAQPPSTVMGPNAKVIPLGLMDGDALRLVTARTVWIDHNTLY ECQDGLLDVTHSSTNITVSNNWFRNQEKVMLLGHDDGHLRDKNMKVTIIFNHFGPNCNQRMPRVRHGYAHVVTNFYQGWEQYAIGGSMSPSIKSEANFFI AP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 378 Download |
| MATTLSCCFT VALFMVILME SPSSCLANMN VIDKCWRGNL LWQSQRQQLA KCSVGFVSKM 60 INNIGKDVVK YKVIDPFDDP LSPKSGTLRY GTTMIKGKVC ITFKNSMTIT LQRPLLLSSF 120 TAIDGRGVDV HITGAGCLLV YQATDIIIHG LRIHHCKAQP PSTVMGPNAK VIPLGLMDGD 180 ALRLVTARTV WIDHNTLYEC QDGLLDVTHS STNITVSNNW FRNQEKVMLL GHDDGHLRDK 240 NMKVTIIFNH FGPNCNQRMP RVRHGYAHVV TNFYQGWEQY AIGGSMSPSI KSEANFFIAP 300 NDVGNKEVTW RKGEKGLWKF YSVRDVFKNG ASFSKQTGVG GAKPNYNQEQ NFKVVDAGSV 360 KELTSESGRE GRTLVEL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-26 | 85 | 297 | 231 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-55 | 119 | 297 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-65 | 107 | 301 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 60 | 368 | 1 | 310 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 24 | 368 | 14 | 359 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 29 | 368 | 1 | 344 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 368 | 1 | 342 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 9 | 308 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 368 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 368 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 4e-17 | 115 | 326 | 128 | 361 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.000000000000001 | 93 | 299 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 0.0000000000006 | 122 | 297 | 82 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
