| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G196900.1 |
| Family | PL1 |
| Protein Properties | Length: 375 Molecular Weight: 41419.8 Isoelectric Point: 9.6407 |
| Chromosome | Chromosome/Scaffold: 10 Start: 55765814 End: 55769683 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 99 | 296 | 0 |
| VCITFKNSMTITLQRPLLLSSFTAIDGRGVDVHINGAGCLLVYQATDIIIHGLRIHHCKAQPPSTVMGPNVKAQPPSTVMGPNAKVIPLGQMDGDAIRLV TARKVWIDHNTLYECQDGLLDVTRGSTNITVSNNWFRNQDKVTVIFNHFGPNCNQRMPRVRHGYAHVANNFYQGWEQYAIGGSMSPSIKSEANFFIAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 375 Download |
| MATTLSCCFT VALFMVFLME SPSSCLANMN VIDKCWRGNL LWRSQRQQLA KCSVGFVGKM 60 INNIGKDVVK YKVIDPSDDP MSPKSGTLRY GTTMIKGKVC ITFKNSMTIT LQRPLLLSSF 120 TAIDGRGVDV HINGAGCLLV YQATDIIIHG LRIHHCKAQP PSTVMGPNVK AQPPSTVMGP 180 NAKVIPLGQM DGDAIRLVTA RKVWIDHNTL YECQDGLLDV TRGSTNITVS NNWFRNQDKV 240 TVIFNHFGPN CNQRMPRVRH GYAHVANNFY QGWEQYAIGG SMSPSIKSEA NFFIAPNDVG 300 NKEVTWRKGE KGLWKFYSVR DVFKNGASFS KQTCVGGAKP NYNQEQNFKV VDAGSVKELT 360 SESGVLRCSR SLIC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-22 | 85 | 293 | 244 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-44 | 119 | 293 | 200 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-54 | 107 | 297 | 219 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 60 | 374 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 24 | 374 | 14 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 29 | 374 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 374 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 9 | 304 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 366 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 366 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000002 | 189 | 295 | 113 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000002 | 115 | 322 | 128 | 361 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.000000001 | 122 | 293 | 82 | 246 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
