| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G197500.1 |
| Family | PL1 |
| Protein Properties | Length: 328 Molecular Weight: 37046.8 Isoelectric Point: 10.1518 |
| Chromosome | Chromosome/Scaffold: 10 Start: 55841865 End: 55843078 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 72 | 272 | 0 |
| WITFKNSMTITLQRPLLLSSFTAIDGRDIDVHITGAGCLLVYQATDIIIHGLRIHHCKAQPPSTVMGLNAKVIPLGQMDGDAIRLVTTRKVWIDHNTLYE CQDGLLDVTRGSTNITVSNNWFRNQDKVMLLRHDDGHLRDKNMKVTVIFNHFGPKCNQRMPRVRHGYAHVANNFFQGWEQYAIGGSMSPSIKSEANFFIA P | |||
| Full Sequence |
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| Protein Sequence Length: 328 Download |
| MNVIDKCWRG NPLWRSQRQQ LAKCSVDFVG KMINNIRKDI AKYKVIHPSD DPLSPKLGTL 60 HYGTTMIKGK VWITFKNSMT ITLQRPLLLS SFTAIDGRDI DVHITGAGCL LVYQATDIII 120 HGLRIHHCKA QPPSTVMGLN AKVIPLGQMD GDAIRLVTTR KVWIDHNTLY ECQDGLLDVT 180 RGSTNITVSN NWFRNQDKVM LLRHDDGHLR DKNMKVTVIF NHFGPKCNQR MPRVRHGYAH 240 VANNFFQGWE QYAIGGSMSP SIKSEANFFI APNDVGNKEV TWRKGDKVLW KFYSVRDVFK 300 NGASFSKQTG ELTSESGVLR CSRSLIC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 68 | 269 | 220 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-53 | 91 | 269 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-62 | 79 | 273 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 32 | 327 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 327 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 327 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 327 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 280 | 29 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 305 | 2 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 305 | 2 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000001 | 65 | 271 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.00000000000002 | 162 | 306 | 155 | 310 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 0.00000000000002 | 162 | 306 | 155 | 310 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR808308 | 256 | 2 | 250 | 0 |
| FD757999 | 213 | 85 | 297 | 0 |
| DT575750 | 226 | 123 | 322 | 0 |
| FG606120 | 318 | 2 | 314 | 0 |
| HO778688 | 353 | 2 | 328 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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