Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G207200.4 |
Family | PL1 |
Protein Properties | Length: 348 Molecular Weight: 37467.1 Isoelectric Point: 6.921 |
Chromosome | Chromosome/Scaffold: 10 Start: 57283723 End: 57288412 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 2 | 193 | 0 |
VIKLKHELIFNSFKTIDGRGVNVHITGNGCLTLQYVSHIIIHNIHVHHCKPSGNTDIASSPTHVGRRGRSDGDGISIFGSQKIWVDHCSLSYCTDGLVDA VMGSTGITISNSYFAHHDEVMLLGHDDRYLPDSGMQVTIAFNVFGVGLVQRMPRCRRGYIHVVNNDFTSWQMYAIGGSGNPTINSQGNRYSA |
Full Sequence |
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Protein Sequence Length: 348 Download |
MVIKLKHELI FNSFKTIDGR GVNVHITGNG CLTLQYVSHI IIHNIHVHHC KPSGNTDIAS 60 SPTHVGRRGR SDGDGISIFG SQKIWVDHCS LSYCTDGLVD AVMGSTGITI SNSYFAHHDE 120 VMLLGHDDRY LPDSGMQVTI AFNVFGVGLV QRMPRCRRGY IHVVNNDFTS WQMYAIGGSG 180 NPTINSQGNR YSAPGDPSAK EVTKRVDTDE KDWTGWNWRT DGDIMVNGAY FVPSGAGVMT 240 QYVKASSVEP KSATLVEQLT SNAGVFGETR EETGSYSYPG YTGTTNAGSG GRGGSSGNDG 300 DFFGMIFGSG APPLPPSRLI ASIFLSFLII LFLHSTTHQG VLPLLLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-19 | 80 | 189 | 121 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-49 | 6 | 191 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-62 | 1 | 195 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL24172.1 | 0 | 1 | 338 | 1 | 346 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | AAQ87025.1 | 0 | 1 | 335 | 139 | 496 | pectate lyase-like protein [Brassica napus] |
RefSeq | XP_002268818.1 | 0 | 1 | 313 | 147 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 270 | 146 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 316 | 147 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 265 | 76 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 265 | 76 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000007 | 1 | 195 | 56 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.0000000000002 | 38 | 264 | 114 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.0000000000002 | 38 | 264 | 114 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC916488 | 298 | 20 | 316 | 0 |
DY275830 | 298 | 20 | 316 | 0 |
CU615463 | 199 | 79 | 277 | 0 |
FC882705 | 268 | 50 | 316 | 0 |
DY271661 | 268 | 50 | 316 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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