Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G221400.1 |
Family | AA7 |
Protein Properties | Length: 532 Molecular Weight: 59644.4 Isoelectric Point: 9.0523 |
Chromosome | Chromosome/Scaffold: 10 Start: 59113027 End: 59114646 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 67 | 526 | 0 |
RNLRFNETYTPKPFLILTALYQSHIQAAIICAKKGNIQMKIRSGGHDYDGLSYVATVPFFVLDMFNLRSIDIDMETETVWVQSGAILGELSYRISELSKT HGFPAGVCPTVGVGGHFTGGGYGNMMRKYGLTVDNIVDAYFIDVNGRIHDRKSMGEDLFWAIRGGGAASFGVVLAYKIKLVRVPEIVTVFRVEKTLEDNA TDIVDQWQHVASKLPKELFVRLVIDVVNSSTRTGGSTVRVSFISLFLGDSKTLVSIMNENLPLLGLSQSDCIETSWIRSVLFWTNITIDSPTDVLLNRTP SLSYLKRKSDYVKQPIPKTALEGIWEKMIELQPAQMIFNPYGGRMAEIASTATPFPHRAGNLWKIQYLANWNQGGAETAQRYIELTRKLHRYMTPFVSKN PREAFLNYRDIDLGVNHNDRGSYLEGRVYGIKYFKGNFNRLVHIKTKFDPTNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 532 Download |
MAISWPLVVS LLLSISSLAT SASNSDSVHE AFVQCLLDNS HPSHPISEAI FTPQSRSYAT 60 VLQSYVRNLR FNETYTPKPF LILTALYQSH IQAAIICAKK GNIQMKIRSG GHDYDGLSYV 120 ATVPFFVLDM FNLRSIDIDM ETETVWVQSG AILGELSYRI SELSKTHGFP AGVCPTVGVG 180 GHFTGGGYGN MMRKYGLTVD NIVDAYFIDV NGRIHDRKSM GEDLFWAIRG GGAASFGVVL 240 AYKIKLVRVP EIVTVFRVEK TLEDNATDIV DQWQHVASKL PKELFVRLVI DVVNSSTRTG 300 GSTVRVSFIS LFLGDSKTLV SIMNENLPLL GLSQSDCIET SWIRSVLFWT NITIDSPTDV 360 LLNRTPSLSY LKRKSDYVKQ PIPKTALEGI WEKMIELQPA QMIFNPYGGR MAEIASTATP 420 FPHRAGNLWK IQYLANWNQG GAETAQRYIE LTRKLHRYMT PFVSKNPREA FLNYRDIDLG 480 VNHNDRGSYL EGRVYGIKYF KGNFNRLVHI KTKFDPTNFF RNEQSIPTLP H* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 5.0e-10 | 91 | 529 | 458 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 5.0e-14 | 89 | 216 | 129 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 1.0e-16 | 470 | 527 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN60572.1 | 0 | 25 | 531 | 25 | 531 | hypothetical protein [Vitis vinifera] |
EMBL | CAN80091.1 | 0 | 25 | 531 | 25 | 531 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002269462.1 | 0 | 25 | 531 | 25 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270181.1 | 0 | 25 | 531 | 25 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002523152.1 | 0 | 27 | 530 | 7 | 509 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 30 | 530 | 5 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 27 | 529 | 6 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 27 | 529 | 6 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsh_A | 0 | 27 | 529 | 6 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 4dns_B | 0 | 25 | 529 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |