| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.010G226900.1 |
| Family | GH28 |
| Protein Properties | Length: 455 Molecular Weight: 49853.4 Isoelectric Point: 8.6022 |
| Chromosome | Chromosome/Scaffold: 10 Start: 59826282 End: 59830217 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 89 | 420 | 0 |
| VACSFPGRIRIVIPAGYTYLVHPVELGGHCKSKITLMISGTIVAPKNPNVWDGLNPRKWLYFREVKHLHVVGGGTINGMGQQWWARSCKRKKTNPCRHAP TALTFHKCKDLKVHDLMLVNSQQMHIAFTNCLRVLVSNLKVIAPSTSPNTDGIHISSSRGVEVKNSVVRTGDDCVSIVGNTSRVQIRNFVCGPGHGISIG SLGKSNSWAQVRNVLVDGAFISNTENGVRIKTWQGGSGYASDMQFMNILMENVAYPIIIDQYYCDSDLPCANQTLAVKVDNISYVHIKGTSAVEEAIRFA CSDSLTCEGLYLEDIQLVLETRGITKSFCWEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 455 Download |
| MKNLGLIVYC SSCSTWNIIV FICSFMLMHS NVVVHAESFD FDSLLQLPKS GSSARIRPRA 60 KQVLSVSDFG AKGDGYHNDT RAFENAWNVA CSFPGRIRIV IPAGYTYLVH PVELGGHCKS 120 KITLMISGTI VAPKNPNVWD GLNPRKWLYF REVKHLHVVG GGTINGMGQQ WWARSCKRKK 180 TNPCRHAPTA LTFHKCKDLK VHDLMLVNSQ QMHIAFTNCL RVLVSNLKVI APSTSPNTDG 240 IHISSSRGVE VKNSVVRTGD DCVSIVGNTS RVQIRNFVCG PGHGISIGSL GKSNSWAQVR 300 NVLVDGAFIS NTENGVRIKT WQGGSGYASD MQFMNILMEN VAYPIIIDQY YCDSDLPCAN 360 QTLAVKVDNI SYVHIKGTSA VEEAIRFACS DSLTCEGLYL EDIQLVLETR GITKSFCWEA 420 YGSSSGLVQP APCLTCSDGF IKQKVPYGLP IGSF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-90 | 60 | 434 | 376 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 7.0e-91 | 62 | 425 | 366 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-97 | 91 | 406 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-122 | 18 | 405 | 404 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 22 | 454 | 433 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28401.1 | 0 | 35 | 445 | 29 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABM67700.1 | 0 | 13 | 454 | 7 | 445 | polygalacturonase [Citrus sinensis] |
| RefSeq | XP_002281827.1 | 0 | 19 | 454 | 4 | 435 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299601.1 | 0 | 41 | 449 | 30 | 443 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 41 | 445 | 12 | 416 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-26 | 158 | 351 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 9e-20 | 161 | 378 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 9e-20 | 161 | 378 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 9e-20 | 161 | 378 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 9e-20 | 161 | 378 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
