Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.010G230300.1 |
Family | GH28 |
Protein Properties | Length: 364 Molecular Weight: 40435.6 Isoelectric Point: 7.2868 |
Chromosome | Chromosome/Scaffold: 10 Start: 60201773 End: 60203608 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 51 | 362 | 0 |
SHTPLGIFRVPYGQKFLVQPLTFNGECRPKNITIQIDGILIAPSDPSSWKCNDANCNNWITFQHFDGLIIQGSGSLHGQGQKWWQMGCMQNKVGFAILDS KNVHISGLTSVDSRKWHISIERSSSVHASNLNIKAPEDSPNTDGIRIQHSTNVTISSSTIKTGDDCIGIGDGSKYININRILCGPGHGISIGSLGENGRR ETVEYVTVRRARFYATENGVRIKTWQGGHGYARHIRLEHISFSRVIKPIIIDQYSCPPYQHCKNYSTAVEVSNILYNDLRGTTSGEIAVELSCSESVPCK NIRMKDIQLDYG |
Full Sequence |
---|
Protein Sequence Length: 364 Download |
MLFSISFFQW VLLVQSVEPF VYDVNFAGAV GDGENDDTEA FKNAWNVICS SHTPLGIFRV 60 PYGQKFLVQP LTFNGECRPK NITIQIDGIL IAPSDPSSWK CNDANCNNWI TFQHFDGLII 120 QGSGSLHGQG QKWWQMGCMQ NKVGFAILDS KNVHISGLTS VDSRKWHISI ERSSSVHASN 180 LNIKAPEDSP NTDGIRIQHS TNVTISSSTI KTGDDCIGIG DGSKYININR ILCGPGHGIS 240 IGSLGENGRR ETVEYVTVRR ARFYATENGV RIKTWQGGHG YARHIRLEHI SFSRVIKPII 300 IDQYSCPPYQ HCKNYSTAVE VSNILYNDLR GTTSGEIAVE LSCSESVPCK NIRMKDIQLD 360 YGIN |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-77 | 20 | 361 | 351 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-80 | 19 | 362 | 354 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-87 | 23 | 360 | 341 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 2.0e-94 | 21 | 359 | 347 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 7.0e-95 | 22 | 359 | 338 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN40008.1 | 0 | 21 | 359 | 57 | 406 | unknown [Picea sitchensis] |
DDBJ | BAB10216.1 | 0 | 1 | 359 | 10 | 362 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI15273.1 | 0 | 1 | 361 | 7 | 361 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002267133.1 | 0 | 17 | 361 | 21 | 360 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267182.1 | 0 | 1 | 361 | 7 | 367 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-19 | 66 | 359 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000001 | 110 | 332 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 110 | 332 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 110 | 332 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000001 | 110 | 332 | 70 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |