Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G007500.1 |
Family | AA7 |
Protein Properties | Length: 568 Molecular Weight: 63912.2 Isoelectric Point: 7.2616 |
Chromosome | Chromosome/Scaffold: 11 Start: 567886 End: 569605 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 70 | 524 | 0 |
NARFNTSSTPKPVIIITPLTESHVSAAVICSNNIGFQLRIRSGGHDFEGLSYVSDQPFFILDMFNLRSISINMADQSVWVQSGATLGELYYRIWEESKVY GFPAGVCPTVGVGGHISGAGYGNMVRKYGLSVDYVVDAKIVDVNGNILDRKAMGEDLFWAIRGGGGASFGVILAFNIKLVDVPETVTVFKLERTLEQNAT DVVYKWQSVAPTTDDNLFMRMLVQPVTLNKQKTIKISIMALYLGDVNSVVPLLVEDFPELGLVTEDCFEMSWIESALWWASFGKGTSPTVLLDRESYHVK FMKRKSDYVKTPISKDGLQWLWKKMIELEEPGLVFNPYGGKMNEIKETETPFPHRAGNLFKIQYSINWKDMGIEADKRSRSLVNRLHSYMTSFVSKNPRS AYLNYRDLDIGITKNWSYQEGKVYGESYFNGNFERLVDVKTVVDPHNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 568 Download |
MTPPLSPPSL LPLLLVAFNI CFSLAASNSV YESFVQCLKT RSNSSDNISD IVYSHSNATY 60 ETVLEQYIRN ARFNTSSTPK PVIIITPLTE SHVSAAVICS NNIGFQLRIR SGGHDFEGLS 120 YVSDQPFFIL DMFNLRSISI NMADQSVWVQ SGATLGELYY RIWEESKVYG FPAGVCPTVG 180 VGGHISGAGY GNMVRKYGLS VDYVVDAKIV DVNGNILDRK AMGEDLFWAI RGGGGASFGV 240 ILAFNIKLVD VPETVTVFKL ERTLEQNATD VVYKWQSVAP TTDDNLFMRM LVQPVTLNKQ 300 KTIKISIMAL YLGDVNSVVP LLVEDFPELG LVTEDCFEMS WIESALWWAS FGKGTSPTVL 360 LDRESYHVKF MKRKSDYVKT PISKDGLQWL WKKMIELEEP GLVFNPYGGK MNEIKETETP 420 FPHRAGNLFK IQYSINWKDM GIEADKRSRS LVNRLHSYMT SFVSKNPRSA YLNYRDLDIG 480 ITKNWSYQEG KVYGESYFNG NFERLVDVKT VVDPHNFFRN EQSIPPRTIK AWNEKNEGSI 540 PPSTSKAWNK SKPYVMIILF MAIGHII* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00387 | glcD | 0.001 | 84 | 257 | 187 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
PLN02805 | PLN02805 | 2.0e-6 | 81 | 271 | 200 | + D-lactate dehydrogenase [cytochrome] | ||
pfam08031 | BBE | 2.0e-16 | 470 | 525 | 56 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 9.0e-27 | 81 | 218 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 7.0e-27 | 48 | 526 | 496 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN81650.1 | 0 | 26 | 526 | 30 | 530 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002267223.1 | 0 | 26 | 526 | 30 | 530 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268606.1 | 0 | 26 | 526 | 30 | 530 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299028.1 | 0 | 5 | 531 | 1 | 536 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317087.1 | 0 | 29 | 531 | 31 | 535 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 27 | 526 | 6 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 27 | 526 | 6 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3vte_A | 0 | 32 | 526 | 5 | 512 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 32 | 526 | 9 | 495 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 32 | 526 | 9 | 495 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |